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. 2019 Dec 30;4:50. Originally published 2019 Mar 11. [Version 2] doi: 10.12688/wellcomeopenres.15126.2

Table 3. Variant annotations and cutoff values used for SNPs identified using the exome data.

Annotation Description Cutoff value
INFO/DP Raw read depth >656,519
INFO/MQ Average mapping quality <38
INFO/MQ0F Fraction of MQ0 reads (smaller is better) >0.0146629
INFO/HOB Bias in the number of HOMs number (smaller is better) >0.1536016
INFO/SGB Segregation based metric >57489.21
INFO/SGB Segregation based metric <-226326.93
QUAL Variant quality <20