Table 3.
Differentially expressed genes involved in flagellar biosynthesis in Acidovorax citrulli ΔacrR strain compared to its wild‐type strain Aac‐5
| Gene ID | Gene product description | logFC | p value |
|---|---|---|---|
| Flagellar assembly | |||
| Aave_2005 | Transcriptional activator FlhC | −2.77 | 6.64E−03 |
| Aave_2006 | Flagellar transcriptional regulator FlhD | −2.83 | 5.87E−03 |
| Aave_2496 | Chemotaxis protein CheW | −1.92 | 2.84E−03 |
| Aave_4383 | Flagellar biosynthetic protein FliR | 4.68 | 4.69E−24 |
| Aave_4384 | Flagellar biosynthesis protein FliQ | 1.97 | 1.12E−04 |
| Aave_4385 | Flagellar biosynthetic protein FliP | 1.48 | 4.31E−03 |
| Aave_4387 | Flagellar motor switch protein FliN | −1.11 | 3.95E−02 |
| Aave_4390 | Flagellar hook‐length control protein FliK | −1.91 | 1.18E−04 |
| Aave_4391 | Flagellar hook‐length control protein FliJ | −2.63 | 2.14E−03 |
| Aave_4392 | Flagellar protein export ATPase FliI | −1.68 | 1.98E−03 |
| Aave_4393 | Flagellar assembly protein FliH | −1.91 | 2.83E−04 |
| Aave_4395 | Flagellar M‐ring protein FliF | −2.04 | 3.52E−05 |
| Aave_4397 | Flagellar protein FliT | −2.89 | 1.40E−09 |
| Aave_4398 | Flagellar export chaperone FliS | −3.13 | 1.88E−05 |
| Aave_4399 | Flagellar cap protein FliD | −1.34 | 6.45E−03 |
| Aave_4400 | Flagellin | −4.35 | 9.36E−22 |
| Aave_4401 | Flagellin | −2.28 | 4.33E−07 |
| Aave_4413 | Flagellar biosynthesis protein FlhA | −3.97 | 1.34E−16 |
| Aave_4414 | Flagellar biosynthesis protein FlhF | −3.29 | 3.55E−12 |
| Aave_4416 | RNA polymerase sigma factor FliA | −1.76 | 9.25E−06 |
| Aave_4418 | Flagellar biosynthesis anti‐sigma factor FlgM | −2.81 | 3.19E−07 |
| Aave_4419 | Flagella basal body P‐ring formation protein FlgA | −2.2 | 1.22E−04 |
| Aave_4420 | Flagellar basal‐body rod protein FlgB | −3.74 | 2.00E−05 |
| Aave_4421 | Flagellar basal body rod protein FlgC | −3.51 | 4.18E−06 |
| Aave_4422 | Flagellar basal body rod modification protein FlgD | −3.94 | 9.00E−14 |
| Aave_4423 | Flagellar hook protein FlgE | −4.35 | 6.65E−20 |
| Aave_4424 | Flagellar basal body rod protein FlgF | −4.39 | 1.60E−14 |
| Aave_4426 | Flagellar L‐ring protein FlgH | −3.55 | 3.19E−11 |
| Aave_4428 | Flagellar P‐ring protein FlgI | −3.7 | 5.46E−13 |
| Aave_4429 | Flagellar rod assembly protein/muramidase FlgJ | −3.32 | 1.23E−10 |
| Aave_4430 | Flagellar hook‐associated protein FlgK | −2.92 | 2.69E−09 |
| Aave_4431 | Flagellar hook‐associated protein 3 FlgL | −2.86 | 8.98E−09 |
| Aave_4592 | Flagellar motor protein MotB | −1.95 | 1.07E−04 |
Gene ID refers to the locus_tag of a differentially expressed gene in A. citrulli ΔacrR strain compared to strain Aac‐5, identified by hits in a BLASTn search against the strain AAC00‐1 genome (GenBank accession number CP000512.1). FC, fold‐change