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. 2020 Mar 6;10:4229. doi: 10.1038/s41598-020-61182-0

Table 1.

Characteristics of deduced protein of Silicon transporter genes identified.

Gene Name Deduced protein Secondary Structure (%) Number of Helices TMHMM (TMHs) Protter (TMHs)
A.A. Length MW (kDa) pI NPA/SPA Domain Instability index Stable or unstable Alpha Helix Beta Sheet Beta Turns Rando m Coil
EcLsi1 299 32.15 7.09 NPA 34.96 Stable 32.44 17.06 4.35 46.15 11 6 6
EcLsi2 473 50.34 8.52 SPA 34.84 Stable 51.16 15.64 4.65 28.54 17 10 10
EcLsi6 293 31.34 6.64 NPA 39.10 Stable 37.20 18.77 3.41 40.61 12 6 6
EcLsi2_1 431 46.30 5.78 42.26 Unstable 46.87 13.46 3.25 36.43 23 5 7
EcLsi2_2 556 60.26 5.96 SPA 39.05 Stable 47.84 15.65 4.68 31.83 23 9 10
EcLsi2_3 436 47.64 5.22 43.02 Unstable 49.31 10.32 4.13 36.24 18 6 7
EcLsi2_4 545 59.19 5.80 SPA 39.72 Stable 51.93 14.13 4.77 29.17 19 9 10
EcLsi2_5 447 48.71 5.32 42.10 Unstable 48.77 11.86 4.47 34.90 19 6 7
EcLsi3_6 518 55.92 6.01 SPA 36.88 Stable 47.88 12.74 5.02 34.36 22 8 9
EcLsi3_7 518 55.92 6.01 SPA 36.88 Stable 47.88 12.74 5.02 34.36 22 8 9
EcLsi3_8 519 55.93 6.01 SPA 37.39 Stable 47.40 14.26 5.20 33.14 23 9 11
EcLsi3_9 480 52.05 5.24 39.45 Stable 46.46 14.79 3.54 35.21 18 7 8
EcLsi1_10 162 17.04 6.18 NPA 27.91 Stable 45.06 21.60 5.56 27.78 7 5 5

(A.A. – Amino Acid, MW- Molecular Weight, pI- Isoelectric point, kDa- Kilo Dalton, TMHs- Transmembrane Helices).