Table 2.

Top30 biological processes enriched by the up- and down-regulated genes in S. Salsa.

GO ID	GO term	Annotated gene number	Enriched gene number	P value
Up-regulated
GO:0070588	calcium ion transmembrane transport	126	23	2.40E-08
GO:0055062	phosphate ion homeostasis	82	18	6.60E-08
GO:0044257	cellular protein catabolic process	1281	74	8.00E-07
GO:2000185	regulation of phosphate transmembrane transport	9	6	8.20E-07
GO:0043487	regulation of RNA stability	78	14	9.60E-07
GO:0007165	signal transduction	4216	249	2.50E-06
GO:0006552	leucine catabolic process	58	12	1.40E-05
GO:0009646	response to absence of light	128	17	5.60E-05
GO:0010252	auxin homeostasis	95	14	1.50E-04
GO:0006970	response to osmotic stress	1872	113	1.70E-04
GO:0040009	regulation of growth rate	35	8	1.80E-04
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	133	17	1.90E-04
GO:0010555	response to mannitol	51	11	2.20E-04
GO:0048278	vesicle docking	129	11	2.80E-04
GO:0009734	auxin-activated signaling pathway	432	37	3.10E-04
Down-regulated
GO:0006412	translation	1928	183	1.10E-19
GO:0006598	polyamine catabolic process	22	10	5.80E-09
GO:0070544	histone H3-K36 demethylation	17	10	6.60E-09
GO:0009812	flavonoid metabolic process	292	45	9.10E-08
GO:0042254	ribosome biogenesis	1069	115	5.10E-07
GO:0009768	photosynthesis, light harvesting in photosystem I	88	19	7.20E-07
GO:0009970	cellular response to sulfate starvation	21	9	1.30E-06
GO:0006270	DNA replication initiation	91	19	2.80E-06
GO:0006564	L-serine biosynthetic process	9	6	3.00E-06
GO:0055114	oxidation-reduction process	4069	299	4.40E-06
GO:0009813	flavonoid biosynthetic process	174	29	4.90E-06
GO:0042752	regulation of circadian rhythm	192	28	5.30E-06
GO:0002181	cytoplasmic translation	61	14	1.10E-05
GO:0006268	DNA unwinding involved in DNA replication	54	13	1.10E-05