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. 2020 Mar 6;19:61. doi: 10.1186/s12934-020-01319-y

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 1 — Analysis of the 16S rRNA gene profiles. Each panel compares the NW, O, and OMS groups. a Mean Relative abundance of the phyla present in each group. b Mean observed OTUs per sample and group. The averaged total unique OTUs from 10,000 rarefactions per sample are shown as points with overlying boxplots showing the distribution within each group. c Mean Shannon’s entropy per sample and group. The averaged Shannon’s index value from 10,000 rarefactions per sample are shown as points with overlying boxplots showing the distribution within each group. d Principal coordinate analyses of Unweighted UniFrac distances. Elipses were calculated based on the most distant samples per group. Samples for which RNA-seq information is available are presented with a larger font