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. 2020 Mar 6;21:214. doi: 10.1186/s12864-020-6623-z

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© The Author(s). 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 1 — Genome alignments using progressive Mauve software [44]. a: scaffolds of the draft genomes of Cupriavidus neocaledonicus STM 6070 (STM 6070) and C. taiwanensis STM 6018 aligned to the replicons of the finished genome of Cupriavidus taiwanensis LMG 19424^T (LMG 19424). b: scaffolds of the draft genomes of Cupriavidus sp. strains AMP6 and UYPR2.512 aligned to the replicons of the finished genome of Cupriavidus taiwanensis LMG 19424^T (LMG 19424). The blocks in the alignment represent the common local colinear blocks (LCBs) among the compared genomes, and homologous blocks in each genome are shown as identical coloured regions. The vertical red lines represent replicon boundaries for LMG 19424^T, whereas they represent contig boundaries for the draft genomes. The shaded red region represents a putative genomic rearrangement between CHR2 and CHR1. Circles with numbers represent the location of heavy metal resistance regions identified in this paper found in LMG 19424^T (white circles containing letters) and in STM 6070 (yellow circles containing letters). See Fig. 3 for the heavy metal resistance regions. Dashed arrows show the location of the LMG 19424^T heavy metal resistance regions in STM 6070