Table 1.
Top 3 PARs nearest differentially expressed genes' transcription start sites for each TE group, present in both S12 and L12 samples. Distance is shown in base pairs. See electronic supplementary material, tables S6 and S7 for complete list.
| TE family | locus start | gene | distance to TSS (bp) | motif(s) present |
|---|---|---|---|---|
| MER44D | chr8: 90 794 231 | RIPK2 | 1915 | AP-1 |
| MER44B | chr8: 22 216 286 | SLC39A14 | 8207 | AP-1, NF-κB |
| MER44B | chr10: 26 970 664 | PDSS1 | 15 377 | AP-1 |
| MLT1H | chr1: 167 754 291 | MPZL1 | 1457 | — |
| MLT1 K | chr7: 89 786 435 | STEAP1 | 2665 | — |
| MLT1 K | chr6: 160 086 744 | SOD2 | 2973 | AP-1 |
| THE1B | chr2: 113 814 070 | IL36RN | 1776 | NF-κB |
| THE1B | chr2: 6 998 590 | CMPK2 | 2455 | AP-1, NF-κB |
| THE1B | chr12: 113 426 846 | OAS2 | 8848 | AP-1, NF-κB |
| Tigger3c | chr10: 90 595 119 | ANKRD22 | 12 561 | — |
| Tigger3b | chr9: 117 583 234 | TNFSF15 | 31 634 | AP-1 |
| Tigger3b | chr3: 172 279 540 | TNFSF10 | 44 395 | AP-1 |