Antibodies |
|
Mouse anti-α-tubulin |
Sigma-Aldrich |
Cat# T5168; RRID: AB_477579
|
Mouse anti-Acetylated tubulin |
Sigma-Aldrich |
Cat# T7451; RRID: AB_609894
|
Rat anti-Tyrosinated tubulin |
Abcam |
Cat# Ab6160; RRID: AB_305328
|
Chicken anti-MAP2 |
Abcam |
Cat# AB5392; RRID: AB_2138153
|
Chicken anti-GFP |
Aves Labs |
Cat# GFP-1020; RRID: AB_10000240
|
Rabbit anti-CAMSAP2 |
Proteintech |
Cat# 17880-1-AP; RRID: AB_2068826
|
Rabbit anti-KIFC3 |
Santa Cruz |
Cat# sc-134681; RRID: AB_10610803
|
Rabbit anti-TRIM46 |
[29] |
N/A |
Mouse anti-MAP2 |
Sigma-Aldrich |
Cat# M9942; RRID: AB_477256
|
Rabbit anti-mCherry/RFP |
Rockland |
Cat# 600-401-379; RRID: AB_2209751
|
Mouse anti-mCherry |
Clonetech |
Cat# 632543; RRID: AB_2307319
|
Rabbit anti-GFP |
Abcam |
Cat# AB290; RRID: AB_2313768
|
anti-chicken Alexa405 |
Abcam |
Cat# AB175675; RRID: AB_2810980
|
anti-rat Alexa488 |
Life Technologies |
Cat# A11006; RRID: AB_2534074
|
anti-mouse Alexa488 |
Life Technologies |
Cat# A11029; RRID: AB_2534088
|
anti-rabbit Alexa488 |
Life Technologies |
Cat# A11034; RRID: AB_2576217
|
anti-chicken Alexa488 |
Thermo Fisher |
Cat# A-11039; RRID: AB_142924
|
anti-mouse Alexa568 |
Life Technologies |
Cat# A11031; RRID: AB_144696
|
anti-rabbit Alexa568 |
Life Technologies |
Cat# A11036; RRID: AB_10563566
|
anti-rabbit Alexa647 |
Life Technologies |
Cat# A21245; RRID: AB_2535813
|
anti-mouse Alexa647 |
Life Technologies |
Cat# A21236; RRID: AB_2535805
|
Goat anti-rabbit IgG Antibody, IRDye 680LT Conjugated |
LI-COR Biosciences |
Cat# 827-11081; RRID: AB_10795015
|
Goat anti-mouse IgG Antibody, IRDye 680LT Conjugated |
LI-COR Biosciences |
Cat# 827-11080; RRID: AB_10795014
|
Goat anti-rabbit IgG Antibody, IRDye 800CW Conjugated |
LI-COR Biosciences |
Cat# 827-08365; RRID: AB_10796098
|
Goat anti-mouse IgG Antibody, IRDye 800CW Conjugated |
LI-COR Biosciences |
Cat# 827-08364; RRID: AB_10793856
|
|
Chemicals |
|
FuGENE 6 |
Roche |
Cat# 11836145001 |
Lipofectamine 2000 |
Thermo Fisher |
Cat# 11668019 |
Vectashield mounting medium |
Vectorlabs |
Cat# H-1000 |
Doxycycline |
Sigma-Aldrich |
Cat# D1822 |
PEI |
PolySciences |
Cat# 24765–2 |
Rapalog |
Takara |
Cat# 635057 |
SIR-tubulin |
Spiro Chrome |
Cat# SC002 |
|
Critical Commercial Assays |
|
Rat Neuron Nucleofector kit |
Amaxa |
Cat# VVPG-1003 |
Dynabeads M-280 streptavidin beads |
Thermo Fisher |
Cat# 11206D |
|
Experimental Models: Cell Lines |
|
African Green Monkey SV40-transformed kidney ATCC CRL-1651 fibroblast (COS-7) |
ATCC |
Cat# CRL-1651 |
Human embryonic kidney 239T (HEK293T) |
ATCC |
Cat# CRL-3216 |
|
Experimental Models: Organisms/Strains |
|
Rat (Wistar) |
Janvier |
N/A |
Mouse (C57 BL/6JRj) |
Janvier |
N/A |
|
Recombinant DNA |
|
Bio-mCherry |
[30] |
N/A |
Bio-GFP-N1 |
[31] |
N/A |
pβactin-GFP |
[32] |
N/A |
pGW1-GFP |
[32] |
N/A |
pSuper vector |
[33] |
N/A |
pβactin-GFP-FRB |
[34] |
N/A |
pGW1-PEX-RFP-FKBP |
[34] |
N/A |
Protein-biotin ligase BirA |
[35] |
N/A |
GFP-MACF18 |
[10] |
N/A |
mCherry-α-tubulin |
[10] |
N/A |
GFP-CAMSAP1 |
[10] |
N/A |
GFP-CAMSAP2 |
[10] |
N/A |
GFP-CAMSAP3 |
[10] |
N/A |
GFP-CAMSAP2-CC-CKK |
[10] |
N/A |
GFP-CAMSAP2-N1 |
This paper |
N/A |
GFP-CAMSAP2-N2 |
This paper |
N/A |
GFP-CAMSAP2-N3 |
This paper |
N/A |
GFP-CAMSAP2-MBD-CKK |
This paper |
N/A |
3GFP-CAMSAP2 |
[10] |
N/A |
Dox-inducible PA-GFP-α-tubulin |
This paper |
N/A |
Bio-mCherry-KIFC3-CAMSAP2 chimera |
This paper |
N/A |
Bio-mCherry-EMTB-CC-MD chimera |
This paper |
N/A |
EMTB-3GFP |
Addgene |
Cat# 26741; RRID: Addgene_26741 |
Bio-mCherry-KIFC3-FL-WT |
This paper |
N/A |
Bio-mCherry-KIFC3-N1 |
This paper |
N/A |
Bio-mCherry-KIFC3-N2 |
This paper |
N/A |
Bio-mCherry-KIFC3-N3 |
This paper |
N/A |
Bio-mCherry-KIFC3-N4 |
This paper |
N/A |
Bio-mCherry-KIFC3-N5 |
This paper |
N/A |
Bio-mCherry-KIFC3-CC-MD |
This paper |
N/A |
Bio-mCherry-KIFC3-Rigor |
This paper |
N/A |
Bio-mCherry-KIFC3-FL (mouse shRNAs resistant) |
This paper |
N/A |
KIFC3-CC-MD-GFP-FRB |
This paper |
N/A |
KIFC3-CC-MD-Rigor-GFP-FRB |
This paper |
N/A |
|
Oligonucleotides |
|
See Table S2. |
N/A |
N/A |
|
Software and Algorithms |
|
ImageJ |
NIH |
https://imagej.nih.gov/ij/; RRID: SCR_003070
|
NeuronJ |
[36] |
http://www.imagescience.org/meijering/software/neuronj/; RRID:SCR_002074
|
GraphPad Prism 8 |
GraphPad |
https://www.graphpad.com/scientific-software/prism/; RRID: SCR_002798
|
Kymoreslicewide |
Github |
https://github.com/ekatrukha/KymoResliceWide |