Bacterial and Virus Strains |
|
E. coli BL21 Star DE3 |
Invitrogen |
Cat#C601003 |
E. coli DH5α |
Invitrogen |
Cat#18265017 |
|
Biological Samples |
|
HFE C282Y genomic DNA homozygous samples |
Coriell |
Cat#NA14620 |
HFE C282Y genomic DNA heterozygous samples |
Coriell |
Cat#NA14691 |
CFTR phe508del genomic DNA homozygous samples |
Coriell |
Cat#NA01531 |
CFTR phe508del genomic DNA heterozygous samples |
Coriell |
Cat#NA20929 |
BRCA2 6174delT genomic DNA homozygous samples |
Coriell |
Cat#NA14170 |
Control genomic DNA samples |
Coriell |
Cat#NA16660 |
America Zika RNA genomic sample |
BEI |
Cat#NR-50244 |
Asian Zika RNA genomic sample |
BEI |
Cat#NR-50244 |
Africa Zika RNA genomic sample |
BEI |
Cat#NR-50085 |
BRCA2 c.8904delC blood sample |
This paper |
N/A |
BRCA2 c.8167G > C blood sample |
This paper |
N/A |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Chlorophenol red-β-D-galactopyranoside |
Sigma-Aldrich |
Cat#59767 |
RNase inhibitor |
Roche |
Cat#3335399001 |
Phusion High-Fidelity PCR Master Mix with HF Buffer |
New England Biolabs |
Cat#M0531S |
|
Critical Commercial Assays |
|
AmpliScribe T7-Flash Transcription Kit |
Lucigen |
Cat#ASF3257 |
PURExpress In Vitro Protein Synthesis Kit |
New England Biolabs |
Cat#E6800L |
RT-RPA kit |
TwistDX |
Cat#TALQBASRT01 |
Basic RPA kit |
TwistDX |
Cat#TABAS03KIT |
RNA Clean and Concentrator Kit |
Zymo Research |
Cat#R1017 |
QIAamp DNA Blood mini kit |
QIAGEN |
Cat#51104 |
|
Oligonucleotides |
|
DNA oligonucleotides |
Integrated DNA Technologies |
See Tables S1, S2, S3, S4, and S5 for DNA primers used and DNA template sequences |
Chemically modified RNA |
Integrated DNA Technologies |
See Table S2 for sequences of chemically modified RNA |
|
Recombinant DNA |
|
GFPmut3b gene |
Green et al., 2014 |
Available on Addgene plasmid p_SNIPR_sensor_GFP (#139463) |
β-galactosidase gene |
Pardee et al., 2016 |
Available on Addgene plasmid p_SNIPR_sensor_LacZ (#139464) |
|
Software and Algorithms |
|
SNIPR design software |
This paper |
https://github.com/Albert09111/SNIPR |