Table 2.

Software comparison

Software	Automatization	Usability	3D visualization	Segmentation time	Registration	Tractography	OS
							Windows	Linux	Macintosh
3D Slicer	3	3	4	15th	x	x	x	x	x
Anatomist	1	1	1	> 25 h			x	x	x
AW Server	3	3	3	> 20 h	x	x	x		x
Freesurfer	2	2	1	> 20 h	x	x		x	x
FSL	1	1	2	> 25 h	x	x		x	x
ImageJ	2	2	1	> 25 h	x		x	x	x
ITK-SNAP	3	4	4	10 h			x	x	x
Mango	1	3	2	> 20 h	x		x	x	x
MedInria	3	3	3	> 20 h	x	x	x	x	x
MIPAV	3	2	2	> 20 h	x	x	x	x	x
Myrian Studio	3	3	4	9 h	x		x
Olea Sphere	3	33	4	> 20 h	x	x	x	x	x
OsiriX	3	3	4	> 20 h	x				x
Seg3D	2	4	3	20 h			x	x	x