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. 2020 Mar 3;11(2):e00097-20. doi: 10.1128/mBio.00097-20

TABLE 1.

P. aeruginosa modifier candidate genes ranked with the Beegle online toola

Rank Gene Protein
1 S1pr1 Sphingosine-1-phosphate receptor 1
2 Vcam1 Vascular cell adhesion protein 1
3 Col11a1 Collagen alpha-1(XI) chain
4 Dpyd Dihydropyrimidine dehydrogenase (NADP+)
5 Agl Amylo-1,6-glucosidase,4-alpha-glucanotransferase
6 Cdc14a Dual-specificity protein phosphatase CDC14A
7 Snx7 Sorting nexin 7
8 Ptbp2 Polypyrimidine tract-binding protein 2
9 Lrrc39 Leucine-rich-repeat-containing protein 39
10 SLC30A7 Solute carrier family 30 (zinc transporter), member 7
11 Palmd Palmdelphin
12 Dbt Dihydrolipoamide branched-chain transacylase
13 Gpr88 G-protein-coupled receptor 88
14 Dph5 Diphthine methyl ester synthase
15 Frrs1 Ferric-chelate reductase 1
a

The ranking among the final 15 candidate disease modifier genes was generated by the Beegle informatics tool (http://beegle.esat.kuleuven.be/). Beegle software started by mining the literature to quickly extract a set of genes known to be linked with the query “lung infection” and then train a genomic model and rank the set of the 15 candidate genes within the murine QTL.