TABLE 2.
Relative expression levels of the msg superfamily in P. murina and P. carinii
| Genes |
P. murina |
P. carinii |
||
|---|---|---|---|---|
| No. of genes | FPKMa | No. of genes | FPKMa | |
| msg-A1 | 22 | 670 (15–2,011) | 65 | 141 (4–2,550) |
| msg-A2 | 14 | 252 (72–556) | 53 | 205 (0–1,202) |
| msg-A3 | 6 | 725 (77–2,015) | 3 | 112 (72–929) |
| msg-C | 6 | 3,895 (662–9,382) | 1 | 41 |
| msg-D | 1 | 1,385 | 1 | 2,154 |
| msg-E | 7 | 839 (100–4,270) | 5 | 1,742 (122–8,010) |
| Unclassified | 8 | 50 (0–90) | 13 | 25 (8–158) |
| UCS | 1 | 17,646 | 1 | 15,830 |
| Genome | 3,623 | 152 (0–17,646)b | 3,646 | 148 (0–15,830)b |
a
FPKM, fragments per kilobase of exon per million fragments mapped based on RNA-Seq data as described in reference (1). Data are expressed as median (minimum to maximum) for multicopy gene families.
b
Median values for all protein-coding genes in the genome.