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. 2020 Feb 28;11:177. doi: 10.3389/fgene.2020.00177

TABLE 2.

Genetic diversity index of the used EST-SSR markers in Opisthopappus.

Primer SSRs Forward primer Reverse primer Tm (°C) T TP PPB (%) He Ho PIC
1 ACA(6) GTTCCACCACCATTG TGCCTAAGAGAACAGATA 56.15 31 31 49.07 0.147 0.154 0.3667
CAA(6) AGTTTGTGAG ATGAGAT
2 ACA(6) GTTCCACCACCATTG GATGGTCAATCAAAGAGT 56.8 34 34 54.95 0.136 0.143 0.2878
CAA(6) AGTTTGTGAG GTGGCTA
3 ACA(6) GTTCCACCACCATTG AGGAATGGGAATACAAA 56.85 27 27 49.12 0.131 0.137 0.3372
CAA(6) AGTTTGTGAG GACGAAAA
4 AAAC(5) CGGAGAAATAGTAAGTCG GAGTAGGCATGAGTGGGT 49.7 52 52 62.65 0.183 0.192 0.3860
5 AAAC(5) ACTCCTACAGTGTCGGTG AATACTACTGCTACTGGCTCTT 53.65 39 39 66.94 0.191 0.200 0.4411
6 AGCA(5) GAGTGGTGTGGTGTTTTACTGTCGT ACGATTTGTGCTGTTCTGGGAGTGG 57.35 31 31 46.01 0.116 0.122 0.3411
7 GAA(6) CAAGGTCGTCAACTCATAA CTGCTGTGATGGGAAAGA 51.3 44 44 61.96 0.171 0.180 0.3863
8 GAA(6) ATGTTCCGTTTGACGAGA GCTACTCCTGACCGACTT 53.85 47 47 48.82 0.138 0.145 0.3756
9 AGCA(5) AACAATAAGTCCGCCACA ACTCACCCAAGAATACATCG 53.45 38 38 49.31 0.166 0.174 0.3958
10 AGCA(5) ATGTGCTTTACCCTTACC GGAGAAGAGTAAAGAGGAGGCT 53.75 40 40 54.47 0.171 0.180 0.3817
11 AGCA(5) GATTTGTGCTGTTCTGGGAG GAGGCTGGGATTTGGGTT 55.7 29 29 58.26 0.136 0.143 0.2919

T, total number of amplified bands; TP, total number of polymorphic bands; PPB, percentage of polymorphism; He, expected heterozygosity; Ho, observed heterozygosity; PIC, polymorphic information content.