TABLE 2.
Genetic diversity index of the used EST-SSR markers in Opisthopappus.
| Primer | SSRs | Forward primer | Reverse primer | Tm (°C) | T | TP | PPB (%) | He | Ho | PIC |
| 1 | ACA(6) | GTTCCACCACCATTG | TGCCTAAGAGAACAGATA | 56.15 | 31 | 31 | 49.07 | 0.147 | 0.154 | 0.3667 |
| CAA(6) | AGTTTGTGAG | ATGAGAT | ||||||||
| 2 | ACA(6) | GTTCCACCACCATTG | GATGGTCAATCAAAGAGT | 56.8 | 34 | 34 | 54.95 | 0.136 | 0.143 | 0.2878 |
| CAA(6) | AGTTTGTGAG | GTGGCTA | ||||||||
| 3 | ACA(6) | GTTCCACCACCATTG | AGGAATGGGAATACAAA | 56.85 | 27 | 27 | 49.12 | 0.131 | 0.137 | 0.3372 |
| CAA(6) | AGTTTGTGAG | GACGAAAA | ||||||||
| 4 | AAAC(5) | CGGAGAAATAGTAAGTCG | GAGTAGGCATGAGTGGGT | 49.7 | 52 | 52 | 62.65 | 0.183 | 0.192 | 0.3860 |
| 5 | AAAC(5) | ACTCCTACAGTGTCGGTG | AATACTACTGCTACTGGCTCTT | 53.65 | 39 | 39 | 66.94 | 0.191 | 0.200 | 0.4411 |
| 6 | AGCA(5) | GAGTGGTGTGGTGTTTTACTGTCGT | ACGATTTGTGCTGTTCTGGGAGTGG | 57.35 | 31 | 31 | 46.01 | 0.116 | 0.122 | 0.3411 |
| 7 | GAA(6) | CAAGGTCGTCAACTCATAA | CTGCTGTGATGGGAAAGA | 51.3 | 44 | 44 | 61.96 | 0.171 | 0.180 | 0.3863 |
| 8 | GAA(6) | ATGTTCCGTTTGACGAGA | GCTACTCCTGACCGACTT | 53.85 | 47 | 47 | 48.82 | 0.138 | 0.145 | 0.3756 |
| 9 | AGCA(5) | AACAATAAGTCCGCCACA | ACTCACCCAAGAATACATCG | 53.45 | 38 | 38 | 49.31 | 0.166 | 0.174 | 0.3958 |
| 10 | AGCA(5) | ATGTGCTTTACCCTTACC | GGAGAAGAGTAAAGAGGAGGCT | 53.75 | 40 | 40 | 54.47 | 0.171 | 0.180 | 0.3817 |
| 11 | AGCA(5) | GATTTGTGCTGTTCTGGGAG | GAGGCTGGGATTTGGGTT | 55.7 | 29 | 29 | 58.26 | 0.136 | 0.143 | 0.2919 |
T, total number of amplified bands; TP, total number of polymorphic bands; PPB, percentage of polymorphism; He, expected heterozygosity; Ho, observed heterozygosity; PIC, polymorphic information content.