Table 7.
Public code for DL-based cardiac image segmentation.
| Modality | Application(s) | References | Basic network | Code repo (If not specified, the repository is located under github.com) |
|---|---|---|---|---|
| MR (SAX) | Bi-ventricular Segmentation | Tran (24) | 2D FCN | vuptran/cardiac-segmentation |
| MR (SAX) | Bi-ventricular Segmentation | Baumgartner et al. (25) | 2D/3D U-net | baumgach/acdc_segmenter |
| MR (SAX) | Bi-ventricular Segmentation; 1st rank in ACDC challenge | Isensee et al. (26) | 2D + 3D U-net (ensemble) | MIC-DKFZ/ACDC2017 |
| MR (SAX) | Bi-ventricular Segmentation | Zheng et al. (27) | Cascaded 2D U-net | julien-zheng/CardiacSegmentationPropagation |
| MR (SAX) | Bi-ventricular segmentation and Motion Estimation | Qin et al. (28) | 2D FCN, RNN | cq615 |
| MR (SAX) | Biventricular Segmentation | Khened et al. (29) | 2D U-net | mahendrakhened |
| MR (3D scans) | WHS | Yu et al. (30) | 3D CNN | yulequan/HeartSeg |
| MR (Multi-view) | Four-chamber Segmentation and Aorta Segmentation | Bai et al. (31, 32) | 2D FCN, RNN | baiwenjia/ukbb_cardiac |
| MR | Cardiac segmentation and motion tracking | Duan et al. (33) | 2.5D FCN + Atlas-based | j-duan/4Dsegment |
| LGE MRI | Left Atrial Segmentation | Chen et al. (34) | 2D U-net | cherise215/atria_segmentation_2018 |
| LGE MRI | Left Atrial Segmentation | Yu et al. (35) | 3D V-net | yulequan/UA-MT |
| CT | WHS | Yang et al. (36) | 3D U-net | xy0806/miccai17-mmwhs-hybrid |
| CT | WHS | Xu et al. (37) | Faster RCNN, 3D U-net | Wuziyi616/CFUN |
| CT, MRI | Coronary arteries | Merkow et al. (38) | 3D U-net | jmerkow/I2I |
| CT, MRI | WHS | Dou et al. (39, 40) | 2D CNN | carrenD/Medical-Cross-Modality-Domain-Adaptation |
| CT, MRI | WHS | Chen et al. (41) | 2D CNN | cchen-cc/SIFA |
| Ultrasound | View classification and four-chamber segmentation | Zhang et al. (42) | 2D U-net | bitbucket.org/rahuldeo/echocv |
SAX, short-axis view; WHS, whole heart segmentation.