Table 2.

Proteins with significant responses to FL in three of the four samples (MY, MM, EY, and EM). Significant changes are indicated by bold numbers.

Majority protein IDs	AGI locus	Gene names	Protein names and descriptions		MY log2(FL/CL)	MM log2(FL/CL)	EY log2(FL/CL)	EM log2(FL/CL)	Peptides
Q94AG1	AT3G07470			putative transmembrane protein (DUF538)	1.06	0.19	1.06	0.88	5
Q00218; F4JIZ3	AT4G33510	DHS2		3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2	0.27	0.38	0.58	0.54	14
Q94A68	AT1G06690			NAD(P)-linked oxidoreductase superfamily protein, chloroplastic	0.33	0.31	0.40	0.40	10
Q2V2S7	AT4G37925	NDHM		NDH-like complex subunit M	0.34	0.42	0.37	0.33	9
Q8L7S8; Q8L7S8-2; F4K180	AT5G26742	RH3; EMB1138		DEAD box ATP-dependent RNA helicase 3, chloroplastic; embryo defective 1138	0.23	0.42	0.27	0.33	26
O49629	AT4G22240	FBN1B; PAP2		fibrillin family protein; plastid-lipid-associated protein 2, chloroplastic	0.37	0.10	0.59	0.32	9
Q9FI56	AT5G50920	CLPC1		ATP-dependent Clp protease ATP-binding subunit C homologue 1	0.24	0.28	0.14	0.28	43
P56772	ATCG00670	clpP		ATP-dependent Clp protease plastid-encoded proteolytic subunit	0.10	0.33	0.19	0.27	4
F4KDZ4; Q9ZP05; A8MRP1; B3H560	AT5G09660	PMDH2		malate dehydrogenase 2, peroxisomal	0.03	0.27	0.33	0.25	17
Q56YA5	AT2G13360	SGAT		serine-glyoxylate aminotransferase	0.27	0.38	0.36	0.24	22
Q9LK47	AT3G23700	SRRP1		S1 RNA-binding ribosomal protein 1	0.32	0.28	0.31	0.23	11
Q9SJU4; F4IGL5; F4IGL7	AT2G21330	FBA1		fructose-bisphosphate aldolase 1, chloroplastic	0.29	0.21	0.35	0.23	19
P17745	AT4G20360	RABE1B; SVR11		translation elongation factor Tu, chloroplastic; suppressor of variagation 11	0.24	0.21	0.21	0.22	22
Q9SHG8	AT1G17100	HBP1		heme-binding protein 1	0.36	0.17	0.32	0.22	8
P25819; F4JM86	AT4G35090	CAT2		catalase 2	0.29	0.28	0.31	0.21	21
Q9MA79	AT1G43670	CFBP		fructose-1,6-bisphosphatase, cytosolic	0.37	0.22	0.29	0.20	15
P54150	AT4G25130	MSR4		peptide methionine sulfoxide reductase A4, chloroplastic	0.25	0.22	0.27	0.19	5
O65396	AT1G11860	GDCST		glycine decarboxylase T protein	0.27	0.09	0.23	0.18	22
Q9SA52	AT1G09340	CSP41B		stem-loop RNA binding protein of 41 kDa B, chloroplastic	0.21	0.12	0.24	0.17	22
O80448	AT2G38230	PDX1.1		pyridoxal 5’-phosphate synthase subunit 1.1	0.37	0.34	0.31	0.16	16
Q6NPR7	AT1G29470			S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	−0.37		−0.20	−0.18	8
Q39255	AT1G75950	SKP1A		SKP1 homologue 1A	−0.22		−0.23	−0.18	3
O04487	AT1G09640			translation elongation factor EF1B, gamma chain 1	−0.31	−0.22	−0.26	−0.20	16
O04151;F4I529	AT1G56340	CRT1; CRT1A		calreticulin 1; calreticulin 1A	−0.37	−0.20	−0.36	−0.22	12
P56780	ATCG00710	psbH		10 kDa PSII reaction center phosphoprotein H	−1.08	−0.40	−0.48	−0.25	1
Q9LIA8	AT3G29360	UGD2		UDP-glucose 6-dehydrogenase 2	−0.34	−0.29	−0.35	−0.26	15
Q9SIN5	AT2G42530	COR15B		cold-regulated 15B, chloroplastic	−0.62	−0.30	−0.26	−0.27	10
O80852;O80852-2	AT2G30860	GSTF9		glutathione S-transferase F9	−0.36	−0.28	−0.40	−0.28	8
O82514;F4KAP2	AT5G63400	ADK1		adenylate kinase 1	−0.81	−0.24	−0.31	−0.29	10
Q96252	AT5G47030			ATP synthase F1 subunit delta’, mitochondrial	−0.47	−0.40		−0.29	3
P42794; P42794-2; P42795	AT2G42740; AT3G58700; AT4G18730; AT5G45775	RPL16A; RPL16B		60S ribosomal protein L16A; L16B	−0.10	−0.32	−0.35	−0.30	8
A8MSC5; O22263; F4IL52; F4IL53	AT2G47470	PDI11		protein disulfide isomerase 11	−0.21	−0.39	−0.33	−0.33	11
Q9LUT2	AT3G17390	MAT4		methionine adenosyltransferase 4	−0.25	−0.32	−0.35	−0.38	20
Q42547; B9DG18; F4HUL6; Q2V4M4	AT1G20620	CAT3		catalase 3	−0.59	−0.39	−0.59	−0.38	20
P21218	AT4G27440	PORB		NADPH:protochlorophyllide oxidoreductase B	−0.33	−0.24	−0.28	−0.42	20
Q9SXS7; F4K5T1	AT5G28020	CYSD2		cysteine synthase D2	−0.38	−0.35	−0.48	−0.47	5
F4HST2; P42759	AT1G20450	ERD10; LTI29		early response to dehydration 10; low temperature-induced 29	−0.69	−0.33	−0.46	−0.52	8
Q9ZPZ4	AT1G09310			protein of unknown function (DUF538)	−0.48	−0.46	−0.53	−0.67	10
Q945Q5	AT2G30695			bacterial trigger factor	0.10	−0.84	−0.85	−0.71	6
P31168	AT1G20440	COR47		dehydrin; cold-regulated 47	−0.54	−0.77	−0.77	−0.72	8
Q8RWG5	AT2G16630	FOCL1		fused outer cuticular ledge 1; pollen Ole e 1 allergen and extensin family protein	−2.08	−2.21	−2.31		1