Table 1.
Image files available within a given second-level folder
| Channel | Description | Type | Mode |
|---|---|---|---|
| CD14 | CD14 staining, original single-channel image | original | gs |
| ROF-filtered image derived from original | cartoon | gs | |
| Mask highlighting the segmented macrophages | segment | bw | |
| Mask highlighting the convex hulls of the segmented macrophages | convhull | bw | |
| Mask highlighting the segmented macrophages bearing CD163 staining as well | multiple | bw | |
| CD163 | CD163 staining, original single-channel image | original | gs |
| ROF-filtered image derived from original | cartoon | gs | |
| Mask highlighting the segmented macrophages | segment | bw | |
| Mask highlighting the convex hulls of the segmented macrophages | convhull | bw | |
| Mask highlighting the segmented macrophages bearing CD14 staining as well | multiple | bw | |
| Pax5 | Pax5 staining, original single-channel image | original | gs |
| ROF-filtered image derived from original | cartoon | gs | |
| Mask highlighting the segmented B-cells | segment | bw | |
| Mask highlighting the convex hulls of the segmented B-cells | convhull | bw | |
| DAPI | DAPI staining, original single-channel image | original | gs |
| ROF-filtered image derived from original | cartoon | gs | |
| Mask representing the evaluation subregion | evalmask | bw | |
| Mask highlighting the segmented cell nuclei | segment | bw | |
| Mask highlighting the convex hulls of the segmented cell nuclei | convhull | bw |