Table A3.
The proportion differences of gut microbiota community of rhesus macaques from two different environments (at genus level)
| Species name | Wild (%) | Provisioned (%) | p‐value (fdr) |
|---|---|---|---|
| Prevotella | 28.66 ± 15.12 | 11.47 ± 12.01 | <.001 |
| No‐rank Ruminococcaceae | 11.64 ± 4.68 | 8.94 ± 7.87 | .092 |
| No‐rank Clostridiaceae | 0.56 ± 1.29 | 12.58 ± 12.58 | <.001 |
| Enterococcus | <0.01 | 8.24 ± 9.14 | <.001 |
| Treponema | 7.4 ± 12.25 | 0.68 ± 0.86 | <.001 |
| Lactobacillus | <0.01 | 7.09 ± 13.37 | <.001 |
| Oscillospira | 4.03 ± 2.99 | 2.79 ± 2.78 | .086 |
| No‐rank Clostridiales | 2.87 ± 1.88 | 3.68 ± 1.95 | .185 |
| Ruminococcus | 4.58 ± 5.79 | 1.77 ± 1.01 | .071 |
| No‐rank Lachnospiraceae | 3.68 ± 3.47 | 2.38 ± 2.88 | .178 |
| No‐rank S24‐7 | 3.66 ± 3.07 | 2.11 ± 2.99 | .015 |
| Coprococcus | 3.95 ± 2.35 | 1.29 ± 0.99 | <.001 |
| No‐rank Peptostreptococcaceae | 0.56 ± 0.47 | 4.53 ± 3.34 | <.001 |
| Sarcina | 1.12 ± 2.52 | 3.7 ± 5.42 | .002 |
| Unclassified Clostridiales | 2.42 ± 1.03 | 2.37 ± 1.99 | .377 |
| Blautia | 2.74 ± 1.99 | 1.78 ± 1.49 | .14 |
| Bifidobacterium | 2.08 ± 4.27 | 2.26 ± 4.18 | .113 |
| No‐rank Christensenellaceae | 1.96 ± 2.23 | 1.13 ± 1.4 | .126 |
| Kurthia | 0 | 2.95 ± 10.87 | .029 |
| Lactococcus | <0.01 | 2.59 ± 5.41 | .016 |
| Unclassified Ruminococcaceae | 1.4 ± 0.81 | 1.11 ± 0.99 | .178 |
| Faecalibacterium | 1.33 ± 2.19 | 1.04 ± 1.63 | .739 |
| No‐rank Bacteroidales | 1.52 ± 1.37 | 0.83 ± 1.05 | .042 |
| No‐rank RF39 | 1.02 ± 1.17 | 1.26 ± 0.75 | .116 |
| No‐rank Coriobacteriaceae | 1.25 ± 1.29 | 0.89 ± 0.58 | .859 |
| Succinivibrio | 0.49 ± 0.9 | 1.4 ± 2.29 | .212 |
| No‐rank [Paraprevotellaceae] | 1.23 ± 1.3 | 0.57 ± 1.63 | <.001 |
| No‐rank WPS‐2 | 1.3 ± 3 | 0.17 ± 0.84 | .003 |
| Unclassified Lachnospiraceae | 0.78 ± 0.71 | 0.64 ± 0.55 | .8 |
| Catenibacterium | 1.1 ± 2.53 | 0.28 ± 0.64 | .167 |
| Butyrivibrio | 0.73 ± 1.04 | 0.35 ± 0.33 | 1 |
| Bulleidia | 0.26 ± 0.24 | 0.66 ± 0.53 | <.001 |
| No‐rank RF16 | 0.85 ± 2.1 | 0.06 ± 0.07 | <.001 |
| No‐rank [Mogibacteriaceae] | 0.33 ± 0.25 | 0.44 ± 0.35 | .422 |
| Unclassified Lactobacillales | 0 | 0.73 ± 0.97 | <.001 |
| No‐rank Streptophyta | 0.14 ± 0.21 | 0.5 ± 0.98 | .091 |
| Dorea | 0.46 ± 0.5 | 0.15 ± 0.14 | .006 |
| No‐rank YS2 | 0.41 ± 0.58 | 0.18 ± 0.24 | .6 |
| Dialister | 0.47 ± 1.18 | 0.09 ± 0.17 | .06 |
| [Ruminococcus] | 0.33 ± 0.39 | 0.21 ± 0.19 | .398 |
| Clostridium | 0.26 ± 0.26 | 0.25 ± 0.37 | .179 |
| Unclassified Bacteroidales Bacteroidia | 0.15 ± 0.17 | 0.31 ± 0.66 | .859 |
| No‐rank Rikenellaceae | 0.15 ± 0.41 | 0.16 ± 0.41 | .364 |
| [Prevotella] | 0.19 ± 0.32 | 0.06 ± 0.14 | .023 |
| Unclassified Firmicutes | <0.01 | 0.25 ± 0.38 | <.001 |
| Unclassified Planococcaceae | 0 | 0.24 ± 0.76 | .0633 |
| No‐rank Streptococcaceae | 0 | 0.23 ± 0.42 | <.001 |
| Roseburia | 0.15 ± 0.22 | 0.08 ± 0.1 | .645 |
| Rummeliibacillus | 0 | 0.22 ± 0.71 | .063 |
| Collinsella | 0.08 ± 0.1 | 0.11 ± 0.11 | .314 |
| Fibrobacter | 0.18 ± 0.33 | 0.01 ± 0.02 | .005 |
| No‐rank Erysipelotrichaceae | 0.12 ± 0.15 | 0.06 ± 0.07 | .232 |
| No‐rank RFP12 | <0.01 | 0.18 ± 0.54 | <.001 |
| Unclassified no‐rank Bacteria | 0.13 ± 0.14 | 0.05 ± 0.04 | .029 |
| Lachnospira | 0.03 ± 0.04 | 0.13 ± 0.11 | <.001 |
| Pediococcus | <0.01 | 0.16 ± 0.76 | .173 |
| Unclassified Bacilli | <0.01 | 0.16 ± 0.2 | <.001 |
| Unclassified Clostridia | 0.14 ± 0.3 | 0.01 ± 0.02 | .003 |
| Candidatus Rhabdochlamydia | <0.01 | 0.14 ± 0.54 | .232 |
| Slackia | 0.09 ± 0.07 | 0.06 ± 0.04 | .276 |
| No‐rank Enterobacteriaceae | 0 | 0.14 ± 0.67 | <.001 |
| Unclassified Clostridiaceae | 0 | 0.14 ± 0.2 | <.001 |
| Unclassified Prevotellaceae | 0.09 ± 0.07 | 0.04 ± 0.06 | .003 |
| RFN20 | 0.07 ± 0.1 | 0.03 ± 0.08 | .009 |
| Anaerostipes | 0.1 ± 0.22 | <0.01 | .006 |
| YRC22 | 0.05 ± 0.1 | 0.05 ± 0.08 | .536 |
| [Eubacterium] | 0.02 ± 0.04 | 0.08 ± 0.06 | <.001 |
| No‐rank Dehalobacteriaceae | 0.08 ± 0.24 | 0.01 ± 0.02 | .655 |
| Adlercreutzia | 0.03 ± 0.03 | 0.07 ± 0.05 | <.001 |
| Sphaerochaeta | 0.04 ± 0.04 | 0.05 ± 0.05 | .461 |
| No‐rank GMD14H09 | 0.05 ± 0.12 | 0.03 ± 0.09 | .614 |
| Flexispira | 0.05 ± 0.05 | 0.03 ± 0.06 | .221 |
| L7A E11 | 0.03 ± 0.07 | 0.04 ± 0.08 | .487 |
| No‐rank Rickettsiales | 0.06 ± 0.07 | 0.02 ± 0.02 | .002 |
| p‐75‐a5 | 0.03 ± 0.03 | 0.03 ± 0.03 | .607 |
| Mogibacterium | 0.02 ± 0.02 | 0.04 ± 0.04 | .009 |
| Lachnobacterium | 0.04 ± 0.06 | <0.01 | .44 |
| Phascolarctobacterium | 0.03 ± 0.06 | 0.01 ± 0.02 | .31 |
| Desulfovibrio | 0.04 ± 0.05 | <0.01 | .003 |
| Unclassified Enterococcaceae | 0 | 0.04 ± 0.05 | <.001 |
| Unclassified Bacillales | 0 | 0.04 ± 0.15 | .063 |
| CF231 | 0.01 ± 0.01 | 0.03 ± 0.05 | .652 |
| Streptococcus | 0.01 ± 0.02 | 0.02 ± 0.07 | .533 |
| Parabacteroides | 0.02 ± 0.06 | 0.01 ± 0.02 | .001 |
| Unclassified Tenericutes | 0.02 ± 0.05 | <0.01 | .022 |
| Unclassified Coriobacteriaceae | <0.01 | 0.02 ± 0.02 | .487 |
| No‐rank p‐2534‐18B5 | 0 | 0.02 ± 0.05 | <.001 |
| 02d06 | <0.01 | 0.02 ± 0.02 | <.001 |
| No‐rank Lactobacillaceae | <0.01 | 0.02 ± 0.1 | .967 |
| No‐rank ML615J‐28 | 0.02 ± 0.02 | <0.01 | .063 |
| No‐rank Leuconostocaceae | 0 | 0.02 ± 0.04 | <.001 |
| Anaerofustis | <0.01 | 0.01 ± 0.01 | <.001 |
| Unclassified Alphaproteobacteria | <0.01 | 0.01 ± 0.03 | .14 |
| Dehalobacterium | <0.01 | <0.01 | .801 |
| No‐rank mitochondria | <0.01 | <0.01 | .271 |
| Megasphaera | <0.01 | 0.01 ± 0.05 | .015 |
| Coprobacillus | <0.01 | <0.01 | .138 |
| Brachyspira | <0.01 | <0.01 | .377 |
| No‐rank Mycoplasmataceae | <0.01 | 0 | .001 |
| Anaeroplasma | <0.01 | <0.01 | .615 |
| No‐rank M2PT2‐76 | <0.01 | <0.01 | .001 |
| Anaerovibrio | <0.01 | <0.01 | .479 |
| No‐rank Veillonellaceae | <0.01 | <0.01 | .888 |
| No‐rank RF32 | <0.01 | <0.01 | .314 |
| Actinobacillus | <0.01 | <0.01 | .406 |
| Oxalobacter | <0.01 | <0.01 | .536 |
| Unclassified Burkholderiales | 0 | <0.01 | .091 |
| Solibacillus | 0 | <0.01 | .372 |
| Unclassified Spirochaetes | <0.01 | <0.01 | .698 |
| Bacillus | <0.01 | <0.01 | .232 |
| No‐rank Prevotellaceae | <0.01 | <0.01 | .254 |
| Akkermansia | <0.01 | <0.01 | .194 |
| No‐rank Alphaproteobacteria | <0.01 | <0.01 | 1 |
| Acinetobacter | <0.01 | <0.01 | .126 |
| No‐rank Victivallaceae | <0.01 | <0.01 | .652 |
| No‐rank Anaeroplasmataceae | <0.01 | <0.01 | .828 |
| Veillonella | <0.01 | <0.01 | .795 |
| Rickettsiella | 0 | <0.01 | .262 |
| No‐rank Xenococcaceae | 0 | <0.01 | .043 |
| Unclassified Erysipelotrichaceae | <0.01 | 0 | .003 |
| Unclassified Rickettsiales | <0.01 | 0 | .006 |
| No‐rank Elusimicrobiaceae | <0.01 | <0.01 | .081 |
| Butyricimonas | <0.01 | <0.01 | .022 |
| No‐rank Caulobacteraceae | <0.01 | <0.01 | .406 |
| Unclassified Bradyrhizobiaceae | <0.01 | <0.01 | .003 |
| Rubellimicrobium | 0 | <0.01 | .063 |
| Kocuria | <0.01 | <0.01 | .859 |
| Sphingomonas | <0.01 | <0.01 | .336 |
| Alloscardovia | <0.01 | <0.01 | .958 |
| Unclassified Micrococcaceae | 0 | <0.01 | .184 |
| Dysgonomonas | <0.01 | 0 | .077 |
| No‐rank Peptococcaceae | <0.01 | <0.01 | .917 |
| No‐rank Planococcaceae | 0 | <0.01 | .536 |
| Curtobacterium | <0.01 | <0.01 | .025 |
| No‐rank Bifidobacteriaceae | 0 | <0.01 | .536 |
| No‐rank Pseudonocardiaceae | <0.01 | <0.01 | .822 |
| Candidatus Phytoplasma | 0 | <0.01 | .536 |
| No‐rank Bacillaceae | <0.01 | 0 | .035 |
| Anaerococcus | <0.01 | <0.01 | .346 |
| rc4‐4 | <0.01 | <0.01 | .129 |
| Sutterella | <0.01 | <0.01 | .614 |
| Ruminobacter | 0 | <0.01 | .262 |
| Unclassified Erythrobacteraceae | 0 | <0.01 | .184 |
| No‐rank R4‐45B | <0.01 | <0.01 | 1 |
| Unclassified Proteobacteria | <0.01 | <0.01 | .629 |
| Brevundimonas | <0.01 | <0.01 | .751 |
| Epulopiscium | 0 | <0.01 | .372 |
| Actinomyces | 0 | <0.01 | .184 |
| No‐rank 32‐20 | <0.01 | 0 | .346 |
| Arcanobacterium | 0 | <0.01 | .372 |
| Bacteroides Bacteroidaceae | <0.01 | 0 | .346 |
| Unclassified Acholeplasmatales | 0 | <0.01 | .536 |
| Aerococcus | 0 | <0.01 | .536 |