Table 4.

Sequencing data for each sample

Sample ID	PE reads	Raw tags	Clean tags	Effective tags	AvgLen (bp)	GC (%)	Q20 (%)	Q30 (%)	Effective (%)
Normal1	79,826	71,406	64,172	62,037	417	53.94	97.8	95.68	77.72
Normal2	79,990	74,027	68,381	63,980	413	54.21	97.87	95.82	79.98
Normal3	79,776	72,191	64,790	62,138	416	53.83	97.92	95.91	77.89
Normal4	80,063	71,608	64,070	62,234	417	53.46	97.75	95.6	77.73
Cont1	79,857	71,232	63,420	60,788	419	53.66	97.82	95.75	76.12
Cont2	80,039	72,767	66,452	63,901	414	54.66	97.73	95.57	79.84
Cont3	79,910	76,987	73,661	70,123	416	52.25	98.0	96.09	87.75
Cont4	79,968	71,690	64,205	61,409	416	53.08	97.73	95.59	76.79
Cont5	80,087	73,036	66,707	65,195	415	54.33	97.92	95.85	81.41
Cont6	79,946	69,589	60,860	59,843	421	53.91	97.82	95.7	74.85
JSD1	79,697	73,088	66,970	64,768	416	54.22	97.81	95.7	81.27
JSD2	80,075	73,609	67,315	63,416	415	53.59	97.88	95.85	79.2
JSD3	79,844	72,784	66,551	64,925	417	53.9	97.8	95.66	81.31
JSD4	79,995	74,039	68,474	66,006	415	54.11	97.77	95.63	82.51
JSD5	80,121	74,950	69,798	67,816	416	53.18	97.85	95.78	84.64
JSD6	80,349	74,416	69,006	66,212	415	53.65	97.72	95.57	82.41
Met1	79,977	72,743	66,571	63,895	416	53.38	97.75	95.57	79.89
Met2	79,879	67,384	57,445	55,569	413	53.77	97.59	95.36	69.57
Met3	79,823	71,404	63,046	61,126	417	54.16	97.86	95.77	76.58