Table 1.
Statistics of core-genome analysis of locally sequenced isolates
|
Clone (n) |
Reference genome (size) |
Percentage coverage of reference genome* |
Core sites† |
SNP distance from reference‡ |
|---|---|---|---|---|
|
CG258 (16) |
DG5547 (5 493 002 bp) |
97.91–99.97 (99.99) |
233 |
3–57 (38; 44) |
|
ST2502 (15) |
DG5544 (5 631 301 bp) |
98.77–99.94 (99.92) |
25 |
0–7 (4; 4) |
|
ST101 (3) |
DG5546 (5 545 304 bp) |
98.13–99.94 (99.03) |
440 |
0–440 (220; 220) |
*Data are expressed as minimum–maximum (mean) values.
†Number of genomic positions present in all samples showing at least one polymorphism (i.e. excluding invariant sites from the core-genome portion).
‡Data are expressed as minimum–maximum (mean; median) values.