Table 2.
General genomic features of the seven completely sequenced O145:H28 STEC strains
|
Feature |
ST (clade) |
||||||
|---|---|---|---|---|---|---|---|
|
ST32 (B) |
ST32 (C) |
ST32 (E) |
ST32 (F) |
ST32 (F) |
ST32 (H) |
ST6130 |
|
|
Strain |
10942 |
RM9872* |
122715 |
95–3192†‡ |
112648 |
RM13514* |
RM13516* |
|
Strain ID in this paper |
C1 |
C2 |
C3 |
C4 |
C5 |
C6 |
C7 |
|
Accession no. |
AP019703-5 |
CP028379-80 |
AP019708-10 |
AP019706-7 |
CP006027-9 |
CP006262-4 |
|
|
Reference |
This study |
Parker et al. [47] |
This study |
Patel et al. [48] |
This study |
Cooper et al. [25] |
Cooper et al. [25] |
|
Chromosome (kb) |
5374 |
5385 |
5418 |
5385 |
5488 |
5585 |
5402 |
|
CDSs |
5090 |
5114 |
5121 |
5143 |
5229 |
5613 |
5324 |
|
rRNA operons |
7 |
7 |
7 |
7 |
7 |
7 |
7 |
|
tRNAs |
100 |
106 |
103 |
102 |
104 |
104 |
98 |
|
PPs |
17 |
16 |
16 |
16 |
18 |
20§ |
12§ |
|
IEs |
6 |
6 |
6 |
6 |
6 |
7§ |
7§ |
|
IS elements |
62 |
70 |
66 |
61 |
60 |
72§ |
66§ |
|
Plasmid (kb) |
92/71 |
89 |
87/49 |
91 |
87/65 |
98/59 |
|
|
CDSs (plasmid total) |
176 |
92 |
152 |
87 |
163 |
188 |
|
|
IS elements |
26 |
23 |
23 |
24 |
28§ |
16§ |
|
|
Total genome size (kb) |
5537 |
5474 |
5554 |
5385 |
5579 |
5737 |
5559 |
CDS, protein-coding sequence.
*Re-annotated using the same pipeline in this study.
†Annotated in this study.
‡No plasmid sequences have been deposited.
§Re-identified using the same pipeline in this study.