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. 2020 Mar 9;8:e8554. doi: 10.7717/peerj.8554

Table 2. Genetic diversity indices of G. intestinalis and Blastocystis by department.

Locus Parameter Bolívar Casanare Córdoba Cauca Total
G. intestinalis gdh n 11 7 4 8 30
π 0.08719 0.16324 0.31284 0.05862 0.18028
Θ 0.14248 0.20964 0.34426 0.0736 0.3224
S 95 121 141 47 202
h 11 7 4 4 24
Hd 0.891 1 1 0.75 0.977
SD 0.039 0.076 0.177 0.139 0.017
tpi n 11 10 4 ND 25
π 0.00689 0.04833 0.11351 ND 0.03922
Θ 0.01228 0.08307 0.12426 ND 0.07113
S 15 95 93 ND 105
h 5 9 4 ND 17
Hd 0.618 0.978 1 ND 0.903
SD 0.164 0.054 0.177 ND 0.054
Blastocystis 18s n 24 28 2 60 114
π 0.27703 0.14334 0.48703 0.08725 0.71859
Θ 0.35406 0.27501 0.48703 0.21444 0.56508
S 209 84 169 6 19
h 24 22 2 5 90
Hd 0.989 0.966 1 0.219 0.993
SD 0.012 0.024 0.5 0.07 0.03

Note:

n, number of sequences; π, nucleotide diversity; Θ, theta (per site) from eta; S, number of segregating sites; h, number of haplotypes; Hd, haplotype diversity; SD, standard deviation; ND, not determined.