Table 2.
FPKM value statistics of 23 candidate genes in the closed modules
| Gene name | Isoform ID | FPKM value | |||||||
|---|---|---|---|---|---|---|---|---|---|
| C-S1 | C-S2 | C-S3 | C-S4 | M-S1 | M-S2 | M-S3 | M-S4 | ||
| PAL1 | PB.11849.10|chr7:40942885–40960253(+)|i2_LQ_samplef2cfa8|c97668/f1p0/2837 | 35.55 | 35.96 | 23.56 | 14.21 | 13.01 | 13.55 | 13.41 | 27.42 |
| PAL2 | PB.11849.12|chr7:40942885–40959874(+)|i2_LQ_samplef2cfa8|c71112/f1p0/2392 | 11.03 | 12.11 | 7.05 | 7.75 | 6.82 | 5.44 | 7.74 | 12.71 |
| PAL3 | PB.11849.14|chr7:40942885–40960512(+)|i3_LQ_samplef2cfa8|c5006/f1p3/3081 | 15.97 | 14.52 | 9.46 | 10.16 | 7.08 | 5.73 | 7.73 | 12.41 |
| PAL4 | PB.11849.16|chr7:40942887–40959833(+)|i2_LQ_samplef2cfa8|c94554/f1p1/2514 | 21.12 | 12.71 | 8.35 | 4.72 | 7.52 | 2.90 | 4.04 | 3.68 |
| PAL6 | PB.11849.2|chr7:40942885–40959392(+)|i1_LQ_samplef2cfa8|c131710/f1p63/1911 | 153.74 | 108.77 | 68.88 | 52.63 | 89.36 | 40.94 | 35.96 | 53.15 |
| PAL7 | PB.11849.3|chr7:40942885–40959926(+)|i2_HQ_samplef2cfa8|c113826/f130p0/2449 | 43.81 | 38.00 | 33.44 | 24.79 | 26.81 | 24.34 | 26.89 | 49.16 |
| PAL8 | PB.11849.4|chr7:40942885–40945992(+)|i2_LQ_samplef2cfa8|c4595/f1p3/2499 | 92.78 | 61.43 | 41.47 | 35.18 | 52.91 | 30.09 | 20.42 | 28.56 |
| PAL9 | PB.11849.8|chr7:40942885–40959918(+)|i2_LQ_samplef2cfa8|c27489/f1p1/2504 | 149.34 | 116.95 | 84.52 | 61.45 | 99.89 | 56.62 | 49.55 | 91.97 |
| PAL15 | PB.9841.1|chr5:43212802–43217702(−)|i2_HQ_samplef2cfa8|c6525/f8p0/2317 | 7.40 | 6.06 | 4.26 | 2.93 | 6.86 | 4.36 | 3.01 | 4.45 |
| 4CL18 | PB.5838.1|chr4:349590–353192(+)|i1_HQ_samplef2cfa8|c237238/f40p8/1909 | 83.07 | 62.39 | 41.54 | 28.99 | 30.55 | 16.48 | 15.56 | 51.90 |
| 4CL22 | PB.8087.5|chr4:53453111–53459491(+)|i1_LQ_samplef2cfa8|c10179/f1p0/1987 | 3.41 | 3.27 | 0.51 | 5.77 | 0.46 | 0.20 | 0.36 | 1.02 |
| CHS1 | PB.10727.1|chr7:5288756–5290374(−)|i1_LQ_samplef2cfa8|c23258/f3p20/1452 | 10.24 | 2.46 | 2.49 | 8.30 | 4.75 | 2.61 | 1.14 | 8.10 |
| CHS2 | PB.10728.1|chr7:5301940–5316126(+)|i1_LQ_samplef2cfa8|c190118/f2p13/1386 | 34.31 | 6.70 | 4.45 | 31.23 | 15.62 | 6.70 | 4.04 | 66.58 |
| CHS4 | PB.10728.3|chr7:5301944–5316192(+)|i1_HQ_samplef2cfa8|c217277/f2p10/1333 | 15.81 | 1.35 | 2.35 | 18.09 | 9.13 | 3.34 | 2.27 | 23.23 |
| CHS8 | PB.1696.1|chr1:44128070–44142309(+)|i1_LQ_samplef2cfa8|c11658/f1p17/1523 | 35.79 | 9.14 | 7.26 | 22.11 | 21.65 | 8.89 | 6.83 | 55.98 |
| CHR1 | PB.9832.2|chr5:42889648–42891090(+)|i1_LQ_samplef2cfa8|c117495/f1p6/1258 | 22.31 | 5.33 | 3.37 | 24.62 | 20.12 | 6.06 | 3.31 | 50.52 |
| CHR2 | PB.9833.6|chr5:42874302–42875653(−)|i1_LQ_samplef2cfa8|c203391/f1p6/1151 | 6.33 | 1.70 | 1.97 | 6.82 | 5.77 | 2.06 | 1.81 | 21.22 |
| CHR3 | PB.9833.7|chr5:42883325–42884800(−)|i1_LQ_samplef2cfa8|c126525/f1p6/1270 | 14.73 | 2.13 | 3.79 | 9.10 | 10.79 | 2.13 | 0.68 | 30.23 |
| F3’H4 | PB.7478.2|chr4:42392721–42394930(−)|i1_HQ_samplef2cfa8|c1984/f8p1/1981 | 9.37 | 4.63 | 5.21 | 10.27 | 11.26 | 9.17 | 4.75 | 10.66 |
| DFR1 | PB.339.2|chr1:7156508–7160534(−)|i1_HQ_samplef2cfa8|c21297/f2p0/1255 | 18.91 | 75.03 | 123.51 | 36.44 | 16.53 | 3.76 | 1.94 | 1.33 |
| DFR2 | PB.340.1|chr1:7164081–7167125(−)|i1_LQ_samplef2cfa8|c4738/f1p0/1273 | 15.51 | 31.71 | 45.29 | 22.74 | 9.27 | 7.72 | 8.19 | 15.33 |
| UFGT22 | PB.11876.1|chr7:41535946–41537368(+)|i1_HQ_samplef2cfa8|c67068/f2p2/1422 | 19.33 | 29.03 | 29.83 | 50.50 | 4.40 | 3.04 | 4.97 | 14.76 |
| UFGT23 | PB.11878.1|chr7:41563371–41564959(+)|i1_LQ_samplef2cfa8|c116694/f1p0/1538 | 32.07 | 41.14 | 42.39 | 51.69 | 16.29 | 18.70 | 15.55 | 34.02 |