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. Author manuscript; available in PMC: 2021 Jan 17.
Published in final edited form as: ACS Chem Biol. 2019 Dec 27;15(1):93–102. doi: 10.1021/acschembio.9b00639

Table 3.

Adenine cleavage rate and specificitya

MutY T (°C) k2 (min−1) OG:A Fold reduction k2 (min−1) G:A Fold reduction Specificity
Ec MutY 37 12 (±2) b 1.80 (±0.05) b 7 (±1)
EcN MutY (1-224) 37 0.39 (±0.07) c 0.15 (±0.01) c 2.6 (±0.5)
Gs MutY 60 54 (±4)d 0.44 (±0.04) e 120 (±10)
EcNGsC 37 1.6 (±0.1) 0.33 (±0.02) 4.8 (±0.4)
60 8 (±1) 1 1.0 (±0.1) 1 8 (±1)
FAH EcNGsC 60 5.1 (±0.2) 1.6 (±0.2) 0.6 (±0.1) 1.7 (±0.3) 8 (±1)
AAH EcNGsC 60 1.0 (±0.2) 8 (±2) 0.4 (±0.1) 2.5 (±0.7) 2.5 (±0.8)
Del FSH EcNGsC 60 0.6 (±0.1) 13 (±3) 0.5 (±0.1) 2.0 (±0.4) 1.2 (±0.3)
a

Rate constant k2 was measured using 20 nM DNA and excess enzyme in reaction mixtures containing 0.05 M sodium chloride. The k2 values are reported as the average of at least three trials. Uncertainties are one standard deviation. Specificity was calculated as the ratio of k2 rate constants measured for OG:A and G:A DNAs. Uncertainties for fold reduction and specificity were derived by propagation of error.

b

k2 values previously reported.40

c

k2 values previously reported.15

d

k2 values previously reported.25

e

k2 values previously reported.41