Table 3.
Adenine cleavage rate and specificitya
MutY | T (°C) | k2 (min−1) OG:A | Fold reduction | k2 (min−1) G:A | Fold reduction | Specificity |
---|---|---|---|---|---|---|
Ec MutY | 37 | 12 (±2) b | 1.80 (±0.05) b | 7 (±1) | ||
EcN MutY (1-224) | 37 | 0.39 (±0.07) c | 0.15 (±0.01) c | 2.6 (±0.5) | ||
Gs MutY | 60 | 54 (±4)d | 0.44 (±0.04) e | 120 (±10) | ||
EcNGsC | 37 | 1.6 (±0.1) | 0.33 (±0.02) | 4.8 (±0.4) | ||
60 | 8 (±1) | 1 | 1.0 (±0.1) | 1 | 8 (±1) | |
FAH EcNGsC | 60 | 5.1 (±0.2) | 1.6 (±0.2) | 0.6 (±0.1) | 1.7 (±0.3) | 8 (±1) |
AAH EcNGsC | 60 | 1.0 (±0.2) | 8 (±2) | 0.4 (±0.1) | 2.5 (±0.7) | 2.5 (±0.8) |
Del FSH EcNGsC | 60 | 0.6 (±0.1) | 13 (±3) | 0.5 (±0.1) | 2.0 (±0.4) | 1.2 (±0.3) |
Rate constant k2 was measured using 20 nM DNA and excess enzyme in reaction mixtures containing 0.05 M sodium chloride. The k2 values are reported as the average of at least three trials. Uncertainties are one standard deviation. Specificity was calculated as the ratio of k2 rate constants measured for OG:A and G:A DNAs. Uncertainties for fold reduction and specificity were derived by propagation of error.
k2 values previously reported.40
k2 values previously reported.15
k2 values previously reported.25
k2 values previously reported.41