Table 2.
Performance of ELMSI for longer micro-satellites classification
| Tumor purity | 0.9 | 0.7 | ||||||||
| No. | Breakpoint | Unit | μN | μT | Breakpoint | μT′ | MSI | Breakpoint | μT′ | MSI |
| 1 | 34489 | TCATT | 86 | 125 | 34491 | 146.84 | 1 | 34489 | 163.44 | 1 |
| 2 | 122387 | GGCC | 425 | 525 | 122389 | 685.63 | 1 | 122387 | 724.23 | 1 |
| 3 | 189108 | GCTAC | 46 | 120 | 189158 | 105.65 | 1 | 189108 | 133.03 | 1 |
| 4 | 190653 | CATC | 43 | 136 | 190655 | 130.52 | 1 | 190653 | 170.21 | 1 |
| 5 | 194236 | AAC | 89 | 166 | 194238 | 145.93 | 1 | 194236 | 151.43 | 1 |
| 6 | 251655 | GCT | 71 | 111 | 251654 | 91.17 | 1 | 251655 | 71.71 | 1 |
| 7 | 311313 | ACCA | 56 | 236 | 311315 | 321.08 | 1 | 311313 | 331.60 | 1 |
| 8 | 356789 | GCT | 76 | 256 | 356790 | 51.47 | 1 | 356789 | 161.35 | 1 |
| 9 | 398971 | TTCG | 45 | 225 | 398973 | 213.12 | 1 | 398971 | 251.42 | 1 |
| 10 | 412340 | G | 100 | 280 | 412505 | 88.05 | 1 | 412340 | 70.50 | 1 |
| 11 | 432344 | TGA | 78 | 258 | 432343 | 177.30 | 1 | 432344 | 220.54 | 1 |
| 12 | 473174 | AAGG | 221 | 354 | 473176 | 462.75 | 1 | 473174 | 403.21 | 1 |
| 13 | 501994 | CGCCG | 78 | 161 | 501996 | 128.26 | 1 | 501994 | 329.52 | 1 |
| 14 | 505733 | ACAGGG | 40 | 111 | 505791 | 222.26 | 1 | 505733 | 248.28 | 1 |
| 15 | 526358 | GTCC | 58 | 144 | 526360 | 167.58 | 1 | 526358 | 152.30 | 1 |
| 16 | 612344 | TGC | 90 | 270 | 612342 | 355.32 | 1 | 612344 | 343.93 | 1 |
| 17 | 622735 | GGTTC | 77 | 142 | 622737 | 114.59 | 1 | 622735 | 197.75 | 1 |
| 18 | 677621 | TCA | 70 | 200 | 677623 | 163.89 | 1 | 677621 | 202.36 | 1 |
| 19 | 712345 | GACT | 89 | 269 | 712337 | N/A | 0 | 712345 | 230.62 | 1 |
| 20 | 731506 | GA | 146 | 203 | 731506 | 104.14 | 1 | 731506 | 88.48 | 1 |
| 21 | 776166 | TAA | 213 | 324 | 776167 | 359.1743 | 1 | 776166 | 564.01 | 1 |
| 22 | 842735 | CTC | 134 | 211 | 842734 | 213.29 | 1 | 842735 | 236.04 | 1 |
| 23 | 866450 | TG | 185 | 220 | 866450 | 371.53 | 1 | 866450 | 526.3551 | 1 |
| 24 | 891334 | TCAGC | 105 | 285 | 891336 | 234.20 | 1 | 891334 | 338.38 | 1 |
| 25 | 908385 | AGAAT | 167 | 229 | 908386 | 194.85 | 1 | 908385 | 294.27 | 1 |
| 26 | 910124 | C | 205 | 301 | 910204 | 98.17 | 1 | 910124 | 32.50 | 1 |
| 27 | 929056 | CCG | 120 | 210 | 929058 | 199.72 | 1 | 929056 | 202.66 | 1 |
| 28 | 944729 | GGACT | 90 | 190 | 944731 | 214.33 | 1 | 944729 | 225.51 | 1 |
| 29 | 964608 | AGGGGG | 56 | 156 | 964610 | 305.59 | 1 | 964608 | 296.61 | 1 |
| 30 | 973099 | GGGCAC | 355 | 460 | 973101 | 849.18 | 1 | 973099 | N/A | 0 |
| Accuracy | 0.967 | 0.967 | ||||||||
| Tumor purity | 0.5 | 0.3 | 0.1 | |||||||
| No. | Unit | Breakpoint | μT′ | MSI | Breakpoint | μT′ | MSI | Breakpoint | μT′ | MS |
| 1 | TCATT | 34491 | 155.09 | 1 | 34489 | 165.59 | 1 | 34489 | 272.51 | 1 |
| 2 | GGCC | 122389 | 354.08 | 1 | 122387 | 710.49 | 1 | 122387 | 619.04 | 1 |
| 3 | GCTAC | 189108 | 177.33 | 1 | 189108 | 127.27 | 1 | 189108 | 94.68 | 1 |
| 4 | CATC | 190655 | 137.45 | 1 | 190653 | 84.00 | 1 | 190653 | 19.35 | 1 |
| 5 | AAC | 194238 | 172.94 | 1 | 194236 | 125.12 | 1 | 194236 | 82.57 | 1 |
| 6 | GCT | 251654 | 86.32 | 1 | 251655 | 30.28 | 1 | 251655 | N/A | 0 |
| 7 | ACCA | 311355 | 240.46 | 1 | 311313 | 361.34 | 1 | 311313 | 509.08 | 1 |
| 8 | GCT | 356790 | 303.44 | 1 | 356789 | 189.28 | 1 | 356789 | 584.24 | 1 |
| 9 | TTCG | 398973 | 275.14 | 1 | 398971 | 282.36 | 1 | 398971 | 295.25 | 1 |
| 10 | G | 412483 | 66.43 | 1 | 412340 | 105.09 | 1 | 412340 | N/A | 0 |
| 11 | TGA | 432343 | 292.88 | 1 | 432344 | 270.84 | 1 | 432344 | 345.93 | 1 |
| 12 | AAGG | 473176 | 434.98 | 1 | 473174 | 640.55 | 1 | 473174 | 779.62 | 1 |
| 13 | CGCCG | 501996 | 278.35 | 1 | 501994 | 365.00 | 1 | 501994 | 800.13 | 1 |
| 14 | ACAGGG | 505844 | 246.03 | 1 | 505733 | 178.62 | 1 | 505733 | 339.87 | 1 |
| 15 | GTCC | 526361 | 120.87 | 1 | 526358 | 132.08 | 1 | 526358 | 112.71 | 1 |
| 16 | TGC | 612419 | 467.03 | 1 | 612344 | 570.02 | 1 | 612344 | N/A | 0 |
| 17 | GGTTC | 622737 | 215.57 | 1 | 622735 | 241.85 | 1 | 622735 | 254.75 | 1 |
| 18 | TCA | 677623 | 226.32 | 1 | 677621 | 241.83 | 1 | 677621 | 220.82 | 1 |
| 19 | GACT | 712347 | 393.39 | 1 | 712345 | 327.39 | 1 | 712345 | N/A | 0 |
| 20 | GA | 731506 | 77.51 | 1 | 731506 | 51.49 | 1 | 731506 | N/A | 0 |
| 21 | TAA | 776167 | 405.81 | 1 | 776166 | 170.12 | 1 | 776166 | 340.20 | 1 |
| 22 | CTC | 842734 | 221.52 | 1 | 842735 | 321.37 | 1 | 842735 | 204.91 | 1 |
| 23 | TG | 866450 | 485.10 | 1 | 866450 | 870.52 | 1 | 866450 | 236.77 | 1 |
| 24 | TCAGC | 891336 | 316.81 | 1 | 891334 | 112.10 | 1 | 891334 | 677.12 | 1 |
| 25 | AGAAT | 908386 | 206.39 | 1 | 908385 | 457.04 | 1 | 908385 | 152.63 | 1 |
| 26 | C | 910220 | N/A | 0 | 910124 | N/A | 0 | 910124 | N/A | 0 |
| 27 | CCG | 929058 | 203.18 | 1 | 929056 | 98.56 | 1 | 929056 | 269.48 | 1 |
| 28 | GGACT | 944731 | 257.57 | 1 | 944729 | 250.61 | 1 | 944729 | 279.33 | 1 |
| 29 | AGGGGG | 964610 | 416.61 | 1 | 964608 | 380.03 | 1 | 964608 | 691.83 | 1 |
| 30 | GGGCAC | 973101 | 1182.00 | 1 | 973099 | N/A | 0 | 973099 | 748.71 | 1 |
| Accuracy | 0.967 | 0.933 | 0.8 |