Table 1.

Summary statistics of ddRAD datasets

Data matrix	ddrad_m48	ddrad_m95	ref_ddrad
Assembly method	De novo	De novo	Referencea
Loci	11,398	2,273	14,495
SNPs	31,724	4,143	51,435
Parsimony informative	8,770	1,713	21,405
Alignment length (bp)	2,040,210	432,991	2,512,418
Missing (%)	15.0	2.0	71.8

^a Viola pubescens genome (GCA_002752925) was used as reference.