Skip to main content
. 2020 Feb 11;10(5):2559–2569. doi: 10.1002/ece3.6084

Table 2.

Information of the C. canephora GM genes used in this study

Enzyme Gene locus Chr. Location Length sequenced (bp) Coding region
Total CDS Promoter ENC GC (GC3)a
Cc‐Man‐S Cc06_g04240 6 2,274 1,593 681 41.24 0.36 (0.41)
Cc01_g05870 1 2,245 2,031 214 52.51 0.39 (0.43)
Cc06_g05120 6 2,076 1,602 474 39.11 0.35 (0.31)
Cc08_g06540 8 2,117 2,082 35 38.95 0.37 (0.30)
Cc10_g07720 10 2,127 2,062 65 67.21 0.39 (0.32)
Cc‐GMGT Cc07_g07220 7 2,233 1,335 898 54.56 0.34 (0.40)
Cc07_g07210 7 2,218 1,347 871 37.71 0.28 (0.32)
Cc00_g25840 0 2,120 1,311 809 39.93 0.30 (0.39)
Cc03_g01930 3 1,823 1,383 440 50.13 0.31 (0.34)
Cc‐alpha Gal Cc02_g05490 2 2,157 1,275 882 58.24 0.41 (0.48)
Cc11_g15950 11 2,118 1,182 936 54.79 0.53 (0.52)
Cc04_g14280 4 2,130 1,137 993 61.01 0.41 (0.37)
Cc11_g00330 11 1,754 1,311 443 57.20 0.41 (0.49)
Cc‐UG4E Cc11_g04810 11 2,142 1,355 787 40.91 0.48 (0.57)
Cc07_g03170 7 2,177 2,116 61 43.42 0.40 (0.53)
Cc00_g06000 0 1,928 1,350 578 38.33 0.38 (0.36)
Cc‐MGT Cc05_g00320 5 2,128 1,086 1,042 36.47 0.44 (0.58)
Cc02_g07370 2 1,736 1,086 650 41.31 0.37 (0.43)

Abbreviation: ENC, effective number of codon.

a

Average for 23 C. canephora accessions, GC3, average GC content at the third‐codon positions of coding genes for all accessions