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. 2020 Feb 25;9:e53901. doi: 10.7554/eLife.53901

Key resources table.

Reagent type
(species) or resource
Designation Source or reference Identifiers Additional
information
Gene (human) KCNQ1 HUGO Gene Nomenclature Committee (HGNC) Gene ID: 3784;
HGNC:6294
Gene (human) KCNE1 HUGO Gene Nomenclature Committee (HGNC) Gene ID: 3753;
HGNC:6240
Gene (human) KCNE3 HUGO Gene Nomenclature Committee (HGNC) Gene ID: 10008;
HGNC:6243
Strain, strain background (Escherichia coli) CT19 transaminase deficient strain Dr. David Waugh, US National Cancer Institute
PMID: 8914274
Used for special isotopic labeling of the KCNQ1 VSD for use in NMR studies.
Strain, strain background (Escherichia coli) Rosetta/
C43(DE3)
Sigma-Aldrich Catalog number 70954 Used for uniform isotopic labeling of KCNQ1 and amino acid-specific labeling for NMR.
Recombinant DNA reagent pET16b expression plasmid encoding tagged human KCNQ1-
(100-249)
PMID: 24606221 Used to express the human KCNQ1 VSD for NMR structural studies
Biological sample (include species here) Xenopus oocytes
(Xenopus laevis, female)
This paper RRID:XEP_Xla Xenopus laevis purchased from Nasco, Fort Atkinson, WI
Recombinant DNA reagent pcDNA3.1 encoding human KCNQ1 or KCNE1 This paper RRID:Addgene_111452 For site-directed mutagenesis
Commercial assay or kit mMessage T7 polymerase kit Applied Biosystems-Thermo Fisher Scientific AM1344
Chemical compound, drug XE991 Millipore Sigma CAS #:
122955-42-4
Chemical compound, drug Chromanol 293B Millipore Sigma CAS #:
163163-23-3
Chemical compound, drug Alexa Fluor488 C5 maleimide Molecular Probes, Eugene, OR Catalog #: A10254
Software Topspin 3.2 Bruker (Scientific Instruments Company) RRID:SCR_014227 NMR data collection and processing.
Software MDD and qMDD interface URL: mddnmr.spektrino.com/
PMID: 21161328
NMR data processing
Software NMRFAM-SPARKY PMID: 25505092
URL: https://nmrfam.wisc.edu/nmrfam-sparky-distribution/
NMR data analysis and
resonance assignments.
Software TALOS-N PMID:25502373
URL: spin.niddk.nih.gov/bax/software/TALOS-N/
Determination of secondary structure from NMR chemical shift data.
Software CHARMM-GUI PMID: 25130509
URL: www.charmm-gui.org/
Preparation of starting structures of the KCNQ1 VSD in lipid bilayers for MD restrained MD simulations.
Software XPLOR-NIH PMID: 28766807
URL: https://nmr.cit.nih.gov/xplor-nih/
Structure calculations using NMR data restraints
Software GPU-accelerated AMBER 16 URL: https://ambermd.org/
PMID: 16200636
Program for execution of MD simulations.
Software Lipid 17 AMBER PMID: 24803855
URL: https://ambermd.org/AmberModels.php
Force field used for MD simulations.
Software CPPTRAJ PMID: 26583988
URL:https://amber-md.github.io/
Analysis of MD trajectoriesfollowing simulations.
Software PatchMaster HEKA RRID:SCR_000034 Electrophysiology data collection
Software IGOR Wavemetrics, Lake Oswego, OR RRID:SCR_000325 Electrophysiology data analysis
Software Clampfit Axon Instruments, Sunnyvale, CA RRID:SCR_011323 Electrophysiology data analysis
Software Sigmaplot SPSS, San Jose, CA RRID:SCR_003210 Electrophysiology data analysis and visualization
Software MATLAB MathWorks, MA RRID:SCR_001622 Electrophysiology data analysis
Sequence-based reagent For site-directed mutagenesis This paper PCR primers PCR primers seq for mutations made in this study (each mutation utilizedtwo primers: b and c).
E170R-b:cacgtacCTGgtcccgaagaacaccac;
E170R-c: cgggacCAGgtacgtggtccgcctc;
R237E-b: gcatcTCcaggatctgcaggaag;
R237E-c:cagatcctgGAgatgctacacgtcgac
F167R-b: ccgtcccgCGgaacaccaccagcac;
F167R-c: gtgttcCGcgggacggagtacg
Q234E-b:ggatctCcaggaagcggatgccc;
Q234E-c: catccgcttcctgGagatcctgaggatgcta
H240E-b: cggtcgacCTCtagcatcctcaggatc
H240E-c: gctaGAGgtcgaccgccaggg
D202N-b: cgatgaggtTAatgatggaaatgggcttc
D202N-c: ccatcatTAacctcatcgtggtcgtg
F351A-b: ggcaGCGcccgagccaagaatcc
F351A-c: gctcgggCGCtgccctgaaggtgcag
C214A-b: cttggaTcccacCGCgaggaccacca
C214A-c: cGCGgtgggAtccaaggggcaggtg
G219C-b: cctgaCacttggaTcccacCGC
G219C-c: ggAtccaagtGtcaggtgtttgccacg
C331A-b: gacagagaaTGCggaggcgatggtcttc
C331A-c: ctccGCAttctctgtctttgccatc