Table 1. KCNQ1 VSD NMR structure statistics.
| Structure restraints | XPLOR-NIH* | PDB 6MIE† |
|---|---|---|
| Total NOE | 958 | 958 |
| Inter-residue: | ||
| Sequential ( | i - j | = 1 ) | 559 | 559 |
| Medium-range ( 1 < | i - j | < 5 ) | 366 | 366 |
| Long-range ( | i - j | ≥ 5 ) | 33 | 33 |
| Hydrogen bonds | 55 | 55 |
| Paramagnetic relaxation enhancement | 403 | 403 |
| Dihedral angle | ||
| ϕ | 97 | 97 |
| φ | 97 | 97 |
| Residual dipolar couplings (DHN) | 54 | 54 |
| Structure statistics | ||
| Ensemble r.m.s.d. (residues 120–152, 160–239) | ||
| Backbone heavy atoms (Å) | 1.41 | 0.96 |
| All heavy atoms (Å) | 2.33 | 1.72 |
| Transmembrane r.m.s.d. (residues 120–142, 160–179, 198–215, 219–239) | ||
| Backbone heavy atoms (Å) | 0.87 | 0.97 |
| r.m.s.d. from experimental restraints | ||
| Distances (Å) | 0.068 ± 0.005 | 0.150 ± 0.019 |
| Dihedral angles (°) | 1.0 ± 0.2 | 10.3 ± 4.2 |
| Residual dipolar coupling (Hz) | 0.92 ± 0.21 | 3.1 ± 0.6 |
| r.m.s.d. from idealized geometry | ||
| Bond lengths (Å) | 0.003 ± 0.001 | 0.005 ± 0.001 |
| Bond angles (°) | 0.44 ± 0.01 | 1.71 ± 0.01 |
| Ramachandran plot (residues 101–152, 160-239)‡ | ||
| Most favorable (%) | 89.3 ± 2.0 | 89.8 ± 2.8 |
| Additionally allowed (%) | 10.0 ± 2.2 | 8.8 ± 2.3 |
| Generously allowed (%) | 0.4 ± 0.8 | 0.7 ± 0.6 |
| Disallowed (%) | 0.3 ± 0.8 | 0.6 ± 0.7 |
*'XPLOR-NIH’ describes the statistics for the XPLOR-NIH structure ensemble generated using experimental restraints, prior to the rMD phase of the calculations.
†'MD’ describes the statistics for the structure ensemble (PDB ID: 6MIE) (see Materials and methods).
‡Procheck NMR.