Table 1. KCNQ1 VSD NMR structure statistics.
Structure restraints | XPLOR-NIH* | PDB 6MIE† |
---|---|---|
Total NOE | 958 | 958 |
Inter-residue: | ||
Sequential ( | i - j | = 1 ) | 559 | 559 |
Medium-range ( 1 < | i - j | < 5 ) | 366 | 366 |
Long-range ( | i - j | ≥ 5 ) | 33 | 33 |
Hydrogen bonds | 55 | 55 |
Paramagnetic relaxation enhancement | 403 | 403 |
Dihedral angle | ||
ϕ | 97 | 97 |
φ | 97 | 97 |
Residual dipolar couplings (DHN) | 54 | 54 |
Structure statistics | ||
Ensemble r.m.s.d. (residues 120–152, 160–239) | ||
Backbone heavy atoms (Å) | 1.41 | 0.96 |
All heavy atoms (Å) | 2.33 | 1.72 |
Transmembrane r.m.s.d. (residues 120–142, 160–179, 198–215, 219–239) | ||
Backbone heavy atoms (Å) | 0.87 | 0.97 |
r.m.s.d. from experimental restraints | ||
Distances (Å) | 0.068 ± 0.005 | 0.150 ± 0.019 |
Dihedral angles (°) | 1.0 ± 0.2 | 10.3 ± 4.2 |
Residual dipolar coupling (Hz) | 0.92 ± 0.21 | 3.1 ± 0.6 |
r.m.s.d. from idealized geometry | ||
Bond lengths (Å) | 0.003 ± 0.001 | 0.005 ± 0.001 |
Bond angles (°) | 0.44 ± 0.01 | 1.71 ± 0.01 |
Ramachandran plot (residues 101–152, 160-239)‡ | ||
Most favorable (%) | 89.3 ± 2.0 | 89.8 ± 2.8 |
Additionally allowed (%) | 10.0 ± 2.2 | 8.8 ± 2.3 |
Generously allowed (%) | 0.4 ± 0.8 | 0.7 ± 0.6 |
Disallowed (%) | 0.3 ± 0.8 | 0.6 ± 0.7 |
*'XPLOR-NIH’ describes the statistics for the XPLOR-NIH structure ensemble generated using experimental restraints, prior to the rMD phase of the calculations.
†'MD’ describes the statistics for the structure ensemble (PDB ID: 6MIE) (see Materials and methods).
‡Procheck NMR.