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. 2020 Feb 12;25(4):786. doi: 10.3390/molecules25040786

Table 1.

List of mutant oncogenes detected with PNA clamped nucleic acid amplification. Accompanying methods used for detection are described in column 2. Limits of detection are listed in column 3 (N/A means the information was Not Available). Length of the PNA used is listed in column 4 (kit refers to a PNA that was part of a kit and the PNA length was not described). References are listed in column 5.

Oncogene Method Used in Combination with PNA Clamped PCR Mutated DNA Detected in Presence of Wild-Type DNA PNA Sequence Length- Number of Nucleobases Refs
KRAS DNA Sequencing 0.5% 15 [59]
Fluorescent Probes 0.03% 17 [60]
Melting Curve Analysis 0.05%, 0.001% 15,17 [61,62]
Fluorescent PNA Sensor with LightCycler 0.01% 17 [63]
High Fidelity DNA Polymerase 0.005% 17 [64]
SmartAmp2 1% 17 [65]
Asymmetric PCR 0.1% 17 [66]
Modified PNA Detection Probes 1% 17 [67]
Next Generation Sequencing N/A 6 [70]
p53 PCR-SSCP N/A,0.1%,0.05% 15,15,15 [71,72,73]
EGFR PNA+LNA 0.1% 14-18 [75]
DNA Sequencing 0.1% Kit [77]
Fluorescent Melting Curve Analysis 0.1%,N/A,0.01% Kit [78,79,80]