| (A) Bud stage hubs |
| GO:0031325 |
Positive regulation of cellular metabolic process |
224 |
16 |
14.52 |
0.000 |
| GO:0006607 |
NLS-bearing protein import into nucleus |
7 |
4 |
0.45 |
0.001 |
| GO:0015991 |
ATP hydrolysis coupled proton transport |
9 |
4 |
0.58 |
0.002 |
| GO:0046470 |
Phosphatidylcholine metabolic process |
9 |
4 |
0.58 |
0.002 |
| GO:0018298 |
Protein-chromophore linkage |
32 |
7 |
2.07 |
0.004 |
| GO:0070507 |
Regulation of microtubule cytoskeleton organization |
6 |
3 |
0.39 |
0.005 |
| GO:1990778 |
Protein localization to cell periphery |
6 |
3 |
0.39 |
0.005 |
| GO:0051592 |
Response to calcium ion |
7 |
3 |
0.45 |
0.008 |
| GO:0006412 |
Translation |
233 |
24 |
15.10 |
0.009 |
| GO:0042594 |
Response to starvation |
60 |
10 |
3.89 |
0.012 |
| GO:0007035 |
Vacuolar acidification |
8 |
3 |
0.52 |
0.012 |
| GO:0006534 |
Cysteine metabolic process |
9 |
4 |
0.58 |
0.012 |
| GO:0009833 |
Plant-type primary cell wall biogenesis |
15 |
4 |
0.97 |
0.013 |
| GO:0048831 |
Regulation of shoot system development |
123 |
12 |
7.97 |
0.017 |
| GO:0032509 |
Endosome transport via multivesicular body sorting pathway |
9 |
3 |
0.58 |
0.017 |
| GO:0051568 |
Histone H3-K4 methylation |
9 |
3 |
0.58 |
0.017 |
| GO:0000271 |
Polysaccharide biosynthetic process |
123 |
11 |
7.97 |
0.023 |
| GO:0006732 |
Coenzyme metabolic process |
116 |
8 |
7.52 |
0.023 |
| GO:0010338 |
Leaf formation |
5 |
2 |
0.32 |
0.037 |
| GO:0048564 |
Photosystem I assembly |
5 |
2 |
0.32 |
0.037 |
| GO:0017001 |
Antibiotic catabolic process |
26 |
3 |
1.69 |
0.037 |
| GO:0044282 |
Small molecule catabolic process |
75 |
10 |
4.86 |
0.038 |
| GO:0006833 |
Water transport |
13 |
3 |
0.84 |
0.048 |
| (B) D stage hubs |
| GO:0006412 |
Translation |
233 |
30 |
16.03 |
0.001 |
| GO:0042939 |
Tripeptide transport |
8 |
4 |
0.55 |
0.001 |
| GO:0016117 |
Carotenoid biosynthetic process |
20 |
6 |
1.38 |
0.002 |
| GO:0006744 |
Ubiquinone biosynthetic process |
5 |
3 |
0.34 |
0.003 |
| GO:0032259 |
Methylation |
88 |
15 |
6.05 |
0.004 |
| GO:0045814 |
Negative regulation of gene expression, epigenetic |
37 |
5 |
2.55 |
0.005 |
| GO:0009206 |
Purine ribonucleoside triphosphate biosynthetic process |
44 |
6 |
3.03 |
0.013 |
| GO:0000271 |
Polysaccharide biosynthetic process |
123 |
11 |
8.46 |
0.013 |
| GO:0009873 |
Ethylene-activated signaling pathway |
78 |
12 |
5.37 |
0.014 |
| GO:0015991 |
ATP hydrolysis coupled proton transport |
9 |
3 |
0.62 |
0.020 |
| GO:0009718 |
Anthocyanin-containing compound biosynthetic process |
26 |
5 |
1.79 |
0.030 |
| GO:0000018 |
Regulation of DNA recombination |
5 |
2 |
0.34 |
0.041 |
| GO:0015976 |
Carbon utilization |
5 |
2 |
0.34 |
0.041 |
| GO:0034314 |
Arp2/3 complex-mediated actin nucleation |
5 |
2 |
0.34 |
0.041 |
| GO:0080144 |
Amino acid homeostasis |
5 |
2 |
0.34 |
0.041 |
| GO:1901615 |
Organic hydroxy compound metabolic process |
121 |
9 |
8.32 |
0.041 |
| GO:0000902 |
Cell morphogenesis |
174 |
9 |
11.97 |
0.042 |
