Table 5. Gene ontology enrichment in D stage modules correlated to pollination syndrome.

GO ID	Term	Annotated	Significant	Expected	p
(A) Bee pollination
GO:0061014	Positive regulation of mRNA catabolic process	6	3	0.26	0.002
GO:0010189	Vitamin E biosynthetic process	8	3	0.35	0.004
GO:0044093	Positive regulation of molecular function	46	4	2.01	0.006
GO:0046686	Response to cadmium ion	99	10	4.33	0.011
GO:0006974	Cellular response to DNA damage stimulus	99	8	4.33	0.017
GO:0002833	Positive regulation of response to biotic stimulus	19	3	0.83	0.017
GO:0009395	Phospholipid catabolic process	5	2	0.22	0.017
GO:0009969	Xyloglucan biosynthetic process	5	2	0.22	0.017
GO:0006544	Glycine metabolic process	7	2	0.31	0.035
GO:0043488	Regulation of mRNA stability	7	2	0.31	0.035
GO:0016569	Covalent chromatin modification	58	4	2.54	0.044
GO:0043902	Positive regulation of multi-organism process	22	3	0.96	0.045
GO:0009631	Cold acclimation	8	2	0.35	0.045
(B) Butterfly pollination
GO:0009853	Photorespiration	19	7	2.00	0.002
GO:0043622	Cortical microtubule organization	13	5	1.37	0.008
GO:0031349	Positive regulation of defense response	51	8	5.37	0.010
GO:0006575	Cellular modified amino acid metabolic process	35	7	3.69	0.018
GO:0070919	Production of siRNA involved in chromatin silencing by small RNA	6	3	0.63	0.018
GO:0042398	Cellular modified amino acid biosynthetic process	7	3	0.74	0.029
GO:0009808	Lignin metabolic process	22	5	2.32	0.031
GO:2000030	Regulation of response to red or far red light	9	3	0.95	0.031
GO:0019220	Regulation of phosphate metabolic process	39	6	4.11	0.031
GO:0010197	Polar nucleus fusion	13	4	1.37	0.040
GO:0051028	mRNA transport	44	9	4.63	0.041
GO:0006833	Water transport	13	4	1.37	0.043
GO:0043902	Positive regulation of multi-organism process	22	4	2.32	0.044
(C) Hummingbird pollination
GO:0009960	Endosperm development	10	6	1.53	0.002
GO:0007163	Establishment or maintenance of cell polarity	5	4	0.77	0.002
GO:0000272	Polysaccharide catabolic process	50	14	7.65	0.005
GO:0010224	Response to UV-B	24	9	3.67	0.007
GO:0009089	Lysine biosynthetic process via diaminopimelate	7	4	1.07	0.013
GO:0009451	RNA modification	353	70	54.01	0.015
GO:0007166	Cell surface receptor signaling pathway	86	21	13.16	0.018
GO:0008285	Negative regulation of cell proliferation	8	4	1.22	0.023
GO:0042939	Tripeptide transport	8	4	1.22	0.023
GO:0009955	Adaxial/abaxial pattern specification	17	8	2.60	0.023
GO:0051656	Establishment of organelle localization	36	9	5.51	0.023
GO:0006213	Pyrimidine nucleoside metabolic process	14	3	2.14	0.023
GO:0033014	Tetrapyrrole biosynthetic process	39	6	5.97	0.024
GO:0009267	Cellular response to starvation	47	14	7.19	0.025
GO:0006635	Fatty acid beta-oxidation	16	6	2.45	0.026
GO:0016556	mRNA modification	35	9	5.36	0.026
GO:0048438	Floral whorl development	69	14	10.56	0.028
GO:0010103	Stomatal complex morphogenesis	14	5	2.14	0.028
GO:0006383	Transcription by RNA polymerase III	5	3	0.77	0.028
GO:0040008	Regulation of growth	126	26	19.28	0.029
GO:0010019	Chloroplast-nucleus signaling pathway	9	4	1.38	0.036
GO:0010506	Regulation of autophagy	9	4	1.38	0.036
GO:0043547	Positive regulation of GTPase activity	9	4	1.38	0.036
GO:0018298	Protein-chromophore linkage	27	8	4.13	0.044
GO:0031425	Chloroplast RNA processing	18	6	2.75	0.045
GO:0051187	Cofactor catabolic process	34	9	5.20	0.050
GO:0002238	Response to molecule of fungal origin	6	3	0.92	0.050
GO:0032958	Inositol phosphate biosynthetic process	6	3	0.92	0.050
GO:0042219	Cellular modified amino acid catabolic process	6	3	0.92	0.050
GO:1905428	Regulation of plant organ formation	6	3	0.92	0.050
GO:0065004	Protein-DNA complex assembly	45	8	6.89	0.050