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Workflow of EpiVIA. (A) Schematic illustration of EpiVIA. By mapping the ATAC-seq data to the combined reference, EpiVIA is able to identify integration sites and provirus accessibility, in addition to host chromatin state. (B) Five different categories of ATAC-seq fragments. EpiVIA is able to identify five different categories of fragments based on the results of alignment to the combined reference genome.
