| 3′-UTRs | 3′-untranslated regions |
| 5hmC | 5-hydroxymethylcytosine |
| 5mC | 5-methylcytosine |
| ac4C | N4-acetylcytidine |
| DAPI | 4′,6-diamidino-2-phenylindole |
| DDR | DNA damage response |
| dn | double null |
| DNMT1 | DNA methyltransferase 1 |
| FTO | obesity-associated factor |
| H3K9me1/me2/me3 | mono-methylated/di-methylated/tri-methylated histones 3 on lysine 9 |
| hm5C | 5-hydroxymethylcytidine |
| HMTs | histone methyltransferases |
| m1A | N1-methyladenosine |
| m3G/TMG | 2,2,7-methylguanosine |
| m3G/TMG | 2,2,7-methylguanosin |
| m5C | 5-methylcytidine |
| m6A | N6-adenosine methylation |
| MEFs | mouse embryonic fibroblasts |
| METTL14 | N6-adenosine-methyltransferase 14 |
| METTL16 | N6-adenosine-methyltransferase 16 |
| METTL3 | N6-adenosine-methyltransferase 3 |
| MMU | mouse chromosome |
| ncRNA | noncoding RNA |
| NER | nucleotide excision repair mechanism |
| NHEJ | nonhomologous end-joining |
| PBS | phosphate buffered saline |
| PCNA | proliferating cell nuclear antigen |
| SAM | S-adenosylmethionine |
| snRNA, snoRNA, small RNAs | small RNAs |
| STED | stimulated emission depletion |
| TCOF | Treacle |
| UV light | ultraviolet light |
| WLL | white light laser |
| wt | wild type |
| γH2AX | phosphorylated histone H2AX |
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