| ACL | ATP-citrate lyase |
| APX | Ascorbate peroxidase |
| ASC | Ascorbate |
| CAT | Catalase |
| CHD | Chromodomain helicase DNA-binding |
| CMT | Chromomethylase |
| DCL | Dicer-like |
| DDM1 | DNA methylation 1 |
| DHF | Dihydrofolate |
| DHFR | Dihydrofolate reductase |
| DME | Demeter |
| DML | Demeter-like |
| DNMT | DNA methyltransferase |
| DRB | dsRNA-binding protein |
| DRM | Domain rearranged methyltransferase |
| dsRBD | dsRNA binding domains |
| GCN5 | General Control Nondepressible 5 |
| GPX | Glutathione peroxidase |
| GR | Glutathione reductase |
| GRX | Glutaredoxin |
| GSH | Glutathione |
| GSNO | S-Nitrosoglutathione |
| GSSG | Oxidized glutathione |
| H2O2 | Hydrogen peroxide |
| HAT | Histone acetyltransferase |
| Hcy | Homocysteine |
| HD2 | Histone deacetylase 2 |
| HDAC | Histone deacetylase |
| HDM | Histone demethylase |
| HKMT | Histone lysine methyltransferase |
| HMT | Histone methyltransferase |
| HDT2 | Histone deacetylase 2 |
| JMJ | Jumonji C domain-containing protein |
| LSD1 | Lysine-specific demethylase 1 |
| Met | Methionine |
| MET1 | DNA methyltransferase 1 |
| MetSo | Methionine sulfoxide |
| MS | Methionine synthase |
| MSR | Methionine sulfoxide reductase |
| MTHFD1 | Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase1 |
| MTHFR | Methylenetetrahyrofolate reductase |
| NAD(P)H | Pyridine nucleotides |
| NO | Nitric oxide |
| OAA | Oxaloacetate |
| 1O2 | Singlet oxygen |
| O2•− | Superoxide radical |
| PCD | Programmed cell death |
| PDH | Pyruvate dehydrogenase |
| PR | Pathogensis-related |
| PRMT | Protein arginine methyltransferase |
| RBOH | Respiratory burst oxidase |
| RdDM | RNA directed DNA methylation |
| RDP3/HDA1 | Reduced potassium dependency 3/histone deacetylase 1 |
| ROS | Reactive oxygen species |
| ROS1 | Repressor of silencing 1 |
| RTL | RNAse III-like |
| SA | Salicylic acid |
| SAM | S-Adenosyl-L-methionine |
| SAMS/MAT | S-Adenosyl methionine synthase/methionine adenosyl transferases |
| SAHH/HOG1 | S-Adenosylhomocysteine hydrolase/homologous gene gilencing 1 |
| SHMT | Serine hydroxylmethyl transferase |
| siRNA | Small interfering RNA |
| SIR2 | Silent information regulator 2 |
| SNP | Sodium nitroprusside |
| SOD | Superoxide dismutase |
| stn7 | State transition 7 |
| SWI/SNF | Switching defective/sucrose non-fermenting |
| THF | Tetrahydrofolate |
| Topo VI | Topoisomerase VI |
| TRX | Thioredoxin |
| TS | Thymidylate synthase |