Skip to main content
. 2020 Feb 18;21(4):1365. doi: 10.3390/ijms21041365

Table 1.

In silico study of putative molecular residual interactions between recombinant Fel d 1 (rFel d 1) and the compounds and assessment of their capabilities to displace N-phenyl-1-naphthylamine (1-NPN).

Compound Names Estimated Free Energy of Binding (kcal/mol) Total Intermolecular Energy (kcal/mol) Frequency H-Bond Residue Hydrophobic Residue (Alkyl/Pi-Alkyl/Pi-Sigma) In Silico Screening a 1-NPN Displacement Screening
Fatty Acids and Other Derivatives
1 Isobutyric acid −2.96 −3.26 27% A88, Y119, L129 No ND
2 Capric Acid −5.16 −7.4 23% L61, F80, V83, F84 No No
3 Lauric Acid −5.84 −8.58 60% Y119 L61, F80, V83, F84 Yes Yes
4 Myristic Acid −3.35 −7.02 36% F84 F13, V133, M134, I137 Yes Yes
5 Palmitic Acid −2.33 −5.88 16% F84 V133, M134 Yes Yes
6 Oleic Acid −2.82 −7.05 50% M134 I64, F80, V83 Yes Yes
7 Linoleic Acid −2.95 −6.88 40% P78 A88, Y119, L129 Yes Yes
8 Dodecanal −4.88 −7.42 2% F84, M134 No No
9 Dodecanol −3.93 −7.02 2% F84, V133, M134 No No
10 Tetradecanol −3.97 −7.89 6% P78, Y81 No No
11 Ethyl Laurate −4.7 −8.02 12% F84 L61, I64, F80, V83, V133, M134, I137 Yes No
12 Methyl Palmitate −2.53 −6.67 20% T76 Yes No
13 Nonanamide −4.53 −6.51 4% L61, I64, V83, F80 No ND
14 Hexadecanamide −2.84 −6.3 18% T135 Y81 Yes ND
15 Octadecanamide −2.81 −6.96 6% G131 Y81, F85 Yes ND
Steroids
1 Androstenone −5.84 −5.84 65% S138 P78, Y81, F85 Yes Yes
2 Androstenedione −5.83 −5.83 44% Y81, F85 Yes Yes
3 Androstenol −5.06 −5.36 22% Y81, F85 No No
4 Progesterone −5.74 −6.04 62% T76 Y81, F85 Yes Yes
5 Hydroxyprogesterone −5.14 −5.54 39% Y81 F85 Yes Yes
6 Pregnenolone −5.59 −6.17 58% T76 Y81, F85 Yes Yes
7 Estradiol −4.94 −5.54 26% T76 Y81, F85 Yes Yes
8 Testosterone −5.6 −5.9 35% T76 Y81, F85 Yes Yes
9 Dihydrotestosterone −5.06 −5.35 12% Y81, F85 No No
10 Estrone −3.56 −3.86 10% D82, G131 F85 Yes Yes
11 Dehydroepiandrosterone (DHEA) −4.64 −4.94 30% Y81, F85 Yes Yes
12 Corticosterone −5.35 −6.38 30% T76, N89 Y81, F85 Yes No
13 Deoxycorticosterone −4.99 −5.29 12% Y81, F85 No No
Fluorescent Probe
1 1-NPN (Central) −6.7 −7.41 50% Y119 L14, L61, M112 Yes /
2 1-NPN (Surface) −4.74 −5.45 30% Y81, F85 Yes /

ND: Not determined because of the fluorescence increase, probably due to non-specific hydrophobic interactions [42]. a The in silico screenings were considered to result in positive outcomes (“yes”) if the following were predicted: (1) minimum one H-bond interaction irrespective of the binding frequency or (2) ≥30% of binding frequency without H-bond. This threshold value of binding frequency (≥30%) was selected from the minimum binding frequency of the fluorescent probe (1-NPN) with rFel d 1.