Table 1.
MEME Suite discovered motifs within 1500 bp upstream from the initiation codon and Tomtom Hits of the top 100 genes in the yellow module form the WGCNA.
| MEME_Discovered_Motifs | Tomtom_Hits | |||||||
|---|---|---|---|---|---|---|---|---|
| Motif LOGO | Motif_IUPAC_Code | e-Value | Nb of Sequences | Target_ID (A. thaliana) | p-Value | e-Value | q-Value | |
| motif#1 |
|
AAAATAWAWAWA | 9.30 × 10−79 | 68 | C2C2dof_tnt.At4g38000_col_a_m1 | 1,57 × 10−5 | 1,37 × 10−2 | 7,27 × 10−3 |
| motif#2 |
|
GGRAGAGRARGA | 2.70 × 10−45 | 70 | C2H2_tnt.TF3A_col_a_m1 | 5,28 × 10−6 | 4,61 × 10−3 | 9,20 × 10−3 |
| motif#3 |
|
GAAGSYTCTAGA | 3.90 × 10−8 | 49 | HSF_tnt.HSFA1E_col_a_m1 | 2,79 × 10−11 | 2,43 × 10−8 | 4,76 × 10−8 |
| motif#4 |
|
TGBTGKTGKTG | 7.90 × 10−8 | 47 | MYBrelated_tnt.AT1G18960_col_a_m1 (AT1G18960) | 6,11 × 10−5 | 5,33 × 10−2 | 7,65 × 10−2 |