Table 1.
The fold changes of core 37 DElncRNAs in breast cancer compared to normal tissue.
| lncRNA symbol | lncRNA Ensembl ID | TN | Her2 positive | Luminal A positive | Luminal B positive | ||||
|---|---|---|---|---|---|---|---|---|---|
| Fold change | P.Val | Fold change | P.Val | Fold change | P.Val | Fold change | P.Val | ||
| DLEU2∗ | ENSG00000231607 | 2.17 | 2.84E‐06 | 2.04 | 2.43E‐05 | 2.21 | 1.32E‐05 | 2.10 | 2.39E‐06 |
| HOTAIR∗ | ENSG00000228630 | 3.14 | 4.22E‐03 | 7.90 | 5.11E‐09 | 2.51 | 2.61E‐02 | 5.13 | 6.74E‐06 |
| LINC01614∗ | ENSG00000230838 | 5.10 | 2.32E‐07 | 11.35 | 3.48E‐11 | 11.18 | 5.68E‐10 | 16.97 | 1.30E‐11 |
| POLR2J4∗ | ENSG00000214783 | 3.44 | 5.91E‐10 | 3.17 | 6.65E‐10 | 3.13 | 7.34E‐11 | 2.87 | 2.66E‐09 |
| THAP9-AS1∗ | ENSG00000251022 | 2.68 | 1.17E‐06 | 2.44 | 2.61E‐05 | 2.81 | 1.58E‐07 | 2.43 | 8.58E‐06 |
| AC005064.1 | ENSG00000234715 | -3.03 | 2.72E‐09 | -3.08 | 1.10E‐07 | -2.05 | 1.41E‐03 | -2.90 | 2.47E‐08 |
| AC099342.1 | ENSG00000226097 | -4.04 | 2.82E‐14 | -4.00 | 2.79E‐11 | -3.79 | 2.66E‐10 | -3.74 | 1.84E‐10 |
| AC245123.1 | ENSG00000277526 | -2.21 | 2.04E‐12 | -2.18 | 1.69E‐10 | -2.28 | 1.34E‐10 | -2.23 | 3.34E‐10 |
| ACVR2B-AS1 | ENSG00000229589 | -3.05 | 2.04E‐15 | -3.22 | 1.69E‐13 | -2.88 | 1.17E‐10 | -3.02 | 2.71E‐12 |
| ADAMTS9-AS2 | ENSG00000241684 | -5.70 | 1.03E‐16 | -5.03 | 5.99E‐13 | -3.06 | 6.45E‐07 | -5.24 | 2.51E‐14 |
| AP001816.1 | ENSG00000254531 | -2.42 | 1.90E‐11 | -2.10 | 4.98E‐06 | -2.09 | 8.57E‐09 | -2.05 | 1.05E‐06 |
| AP002518.1 | ENSG00000256195 | -2.10 | 4.86E‐09 | -2.20 | 8.35E‐08 | -2.16 | 1.76E‐07 | -2.20 | 1.34E‐07 |
| AP003110.1 | ENSG00000255084 | -2.03 | 1.19E‐07 | -2.02 | 1.98E‐06 | -2.10 | 1.27E‐07 | -2.04 | 1.60E‐06 |
| CARMN | ENSG00000249669 | -6.18 | 4.66E‐15 | -4.67 | 2.23E‐11 | -3.02 | 7.51E‐09 | -4.10 | 1.78E‐11 |
| FGF14-AS2 | ENSG00000272143 | -2.23 | 2.36E‐06 | -2.90 | 1.26E‐13 | -2.41 | 2.13E‐09 | -2.57 | 9.86E‐10 |
| FZD10-AS1 | ENSG00000250208 | -2.62 | 7.84E‐14 | -2.66 | 3.70E‐14 | -2.08 | 7.17E‐09 | -2.57 | 7.81E‐12 |
| GAS1RR | ENSG00000226237 | -2.38 | 6.27E‐09 | -2.68 | 3.76E‐10 | -2.18 | 1.95E‐08 | -2.43 | 6.91E‐09 |
| GLIDR | ENSG00000278175 | -2.89 | 5.85E‐11 | -3.65 | 1.61E‐11 | -2.02 | 3.05E‐07 | -2.99 | 1.61E‐11 |
| HOTAIRM1 | ENSG00000233429 | -3.59 | 4.33E‐08 | -3.80 | 9.15E‐09 | -3.39 | 2.07E‐09 | -3.89 | 8.96E‐12 |
| HSD11B1-AS1 | ENSG00000227591 | -5.50 | 3.99E‐13 | -5.87 | 1.55E‐10 | -5.65 | 6.09E‐10 | -5.94 | 1.42E‐10 |
| LINC00358 | ENSG00000229578 | -2.25 | 7.11E‐11 | -2.27 | 1.52E‐08 | -2.19 | 6.90E‐08 | -2.21 | 6.47E‐08 |
| LINC00408 | ENSG00000226250 | -6.38 | 1.23E‐22 | -6.15 | 2.14E‐18 | -4.85 | 9.77E‐14 | -5.02 | 6.61E‐15 |
| LINC00968 | ENSG00000246430 | -2.17 | 1.36E‐06 | -2.20 | 1.63E‐05 | -2.18 | 2.13E‐05 | -2.21 | 1.29E‐05 |
| LINC01140 | ENSG00000267272 | -3.15 | 2.57E‐07 | -3.20 | 3.98E‐06 | -2.15 | 1.27E‐03 | -2.65 | 8.56E‐06 |
| LINC01192 | ENSG00000241369 | -2.38 | 2.37E‐08 | -2.42 | 6.29E‐07 | -2.51 | 4.75E‐07 | -2.57 | 2.07E‐07 |
| LINC01697 | ENSG00000232079 | -5.65 | 7.26E‐18 | -5.65 | 7.39E‐15 | -4.53 | 1.53E‐09 | -5.73 | 7.03E‐15 |
| LINC01720 | ENSG00000231175 | -2.05 | 1.58E‐11 | -2.06 | 1.88E‐09 | -2.02 | 3.89E‐09 | -2.03 | 1.08E‐09 |
| LINC02053 | ENSG00000241696 | -5.70 | 6.69E‐18 | -5.53 | 1.07E‐13 | -5.59 | 6.05E‐13 | -5.07 | 2.61E‐12 |
| LINC02535 | ENSG00000234155 | -2.09 | 8.56E‐11 | -2.13 | 5.70E‐09 | -2.15 | 6.59E‐09 | -2.12 | 1.07E‐08 |
| MEG3 | ENSG00000214548 | -6.39 | 3.25E‐15 | -3.67 | 3.67E‐06 | -2.37 | 9.12E‐05 | -3.64 | 1.20E‐07 |
| MIR497HG | ENSG00000267532 | -2.69 | 2.77E‐17 | -2.82 | 1.69E‐14 | -2.34 | 1.84E‐11 | -2.68 | 3.47E‐13 |
| PGM5-AS1 | ENSG00000224958 | -2.35 | 2.44E‐06 | -3.22 | 4.17E‐09 | -2.18 | 5.62E‐07 | -2.35 | 4.72E‐06 |
| PRICKLE2-AS3 | ENSG00000226017 | -2.26 | 2.07E‐09 | -2.13 | 6.53E‐07 | -2.15 | 1.11E‐06 | -2.31 | 9.74E‐08 |
| SNHG29 | ENSG00000175061 | -3.47 | 5.31E‐10 | -4.40 | 5.21E‐09 | -2.37 | 2.28E‐07 | -3.57 | 5.97E‐09 |
| TRHDE-AS1 | ENSG00000236333 | -2.68 | 3.80E‐08 | -2.87 | 1.82E‐08 | -2.63 | 1.08E‐07 | -2.68 | 3.80E‐08 |
| WARS2-AS1 | ENSG00000231365 | -2.21 | 1.39E‐11 | -2.49 | 1.46E‐12 | -2.18 | 5.92E‐09 | -2.31 | 4.35E‐09 |
| ZNF436-AS1 | ENSG00000249087 | -2.88 | 1.03E‐10 | -3.10 | 2.83E‐10 | -2.57 | 6.59E‐09 | -2.75 | 2.95E‐09 |
The five DElncRNAs upregulated in all the four breast cancer subtypes were marked with “∗”.