Table 1.
Gene clusters identified in algal genomes.
| Class | Species | Ungapped Sequence Length | Accession | Number of Gene Clusters | ||||
|---|---|---|---|---|---|---|---|---|
| Green Algae (Chlorophytes) | Terpene | T3PKS | T1PKS | NRPS | Other(A) | |||
| Chlamydomonas reinhardtii | 107,048,224 | GCA_000002595 | 1 | 3 | 1 | 0 | 0 | |
| Micromonas pusilla | 21,706,984 | GCA_000151265 | 5 | 0 | 2 | 0 | 0 | |
| Volvox carteri f. nagariensis | 125,467,762 | GCA_000143455 | 3 | 2 | 0 | 0 | 0 | |
| Chlorella variabilis | 42,214,557 | GCA_000147415 | 5 | 1 | 0 | 1 | 0 | |
| Coccomyxa subellipsoidea C-169 | 48,826,616 | GCA_000258705 | 1 | 5 | 1 | 0 | 0 | |
| Auxenochlorella pyrenoidosa | 48,566,231 | GCA_001430745 | 2 | 0 | 0 | 0 | 0 | |
| Helicosporidium sp. | 12,373,820 | GCA_000690575 | 1 | 2 | 0 | 0 | 0 | |
| Parachlorella kessleri | 59,187,803 | GCA_001598975 | 1 | 0 | 1 | 2 | 0 | |
| Prototheca cutis | 19,644,471 | GCA_002897115 | 2 | 1 | 1 | 0 | 0 | |
| Eudorina sp. | 182,993,185 | GCA_003117195 | 2 | 3 | 0 | 0 | 0 | |
| Yamagishiella unicocca | 134,234,618 | GCA_003116995 | 1 | 1 | 0 | 0 | 1 | |
| Trebouxia gelatinosa | 60,898,934 | GCA_000818905 | 1 | 0 | 0 | 0 | 0 | |
| Micractinium conductrix | 61,018,900 | GCA_002245815 | 2 | 0 | 0 | 0 | 0 | |
| Dunaliella salina | 280,838,039 | GCA_002284615 | 2 | 1 | 0 | 0 | 0 | |
| Botryococcus braunii | 179,769,887 | GCA_002005505 | 2 | 4 | 0 | 0 | 0 | |
| Tetrabaena socialis | 97,974,014 | GCA_002891735 | 2 | 0 | 0 | 0 | 0 | |
| Picocystis sp. ML | 29,646,247 | GCA_003665715 | 7 | 3 | 3 | 0 | 0 | |
| Ostreococcus tauri | 14,758,467 | GCA_002158475 | 5 | 0 | 1 | 0 | 2 | |
| Gonium pectorale | 117,596,311 | GCA_001584585 | 2 | 3 | 1 | 0 | 0 | |
| Cymbomonas tetramitiformis | 262,008,979 | GCA_001247695 | 1 | 3 | 4 | 3 | 2 | |
| Klebsormidium nitens | 103,146,182 | GCA_000708835.1 | 2 | 0 | 0 | 0 | 1 | |
| Chara braunii | 1,429,941,810 | GCA_003427395 | 5 | 1 | 0 | 0 | 0 | |
| Average | 2.5 | 1.5 | 0.7 | 0.3 | 0.3 | |||
| Red Algae (Rhodophytes) | ||||||||
| Gracilariopsis chorda | 92,180,038 | GCA_003194525 | 3 | 0 | 0 | 0 | 0 | |
| Porphyridium purpureum | 19,451,899 | GCA_000397085 | 1 | 1 | 0 | 0 | 0 | |
| Galdieria sulphuraria | 13,419,354 | GCA_000341285 | 3 | 1 | 0 | 0 | 0 | |
| Chondrus crispus | 104,085,276 | GCA_000350225 | 3 | 1 | 0 | 0 | 0 | |
| Porphyra umbilicalis | 87,766,581 | GCA_002049455 | 4 | 1 | 0 | 0 | 0 | |
| Gracilariopsis lemaneiformis | 86,759,375 | GCA_003346895 | 4 | 1 | 1 | 0 | 1 | |
| Kappaphycus alvarezii | 336,721,358 | GCA_002205965 | 3 | 3 | 1 | 0 | 0 | |
| Average | 3 | 1.1 | 0.3 | 0 | 0.1 | |||
| Glaucophytes | ||||||||
| Cyanophora paradoxa | 99,940,401 | GCA_004431415 | 2 | 0 | 0 | 1 | 0 | |
| Brown Algae (Phaeophytes) | ||||||||
| Ectocarpus siliculosus | 191,106,465 | GCA_000310025 | 1 | 3 | 1 | 0 | 1 | |
| Saccharina japonica | 537,522,535 | GCA_000978595 | 1 | 1 | 0 | 0 | 1 | |
| Cladosiphon okamuranus | 166,898,169 | GCA_001742925 | 10 | 2 | 3 | 1 | 3 | |
| Average | 4 | 2 | 1.3 | 0.3 | 1.7 | |||
| Haptophytes | ||||||||
| Emiliania huxleyi | 155,930,723 | GCA_000372725 | 2 | 2 | 8 | 0 | 8 | |
| Chrysochromulina parva | 65,764,750 | GCA_002887195 | 3 | 3 | 5 | 2 | 5 | |
| Chrysochromulina tobinii | 59,073,094 | GCA_001275005 | 4 | 3 | 5 | 1 | 6 | |
| Average | 3 | 2.7 | 6 | 1 | 6.3 | |||
| Diatoms (Bacillariophytes) | ||||||||
| Thalassiosira pseudonana | 32,272,629 | GCA_000149405 | 5 | 1 | 0 | 0 | 1 | |
| Thalassiosira oceanica | 92,185,637 | GCA_000296195 | 4 | 0 | 0 | 1 | 1 | |
| Phaeodactylum tricornutum | 27,017,695 | GCA_000150955 | 5 | 1 | 0 | 0 | 4 | |
| Average | 4.7 | 0. 7 | 0 | 0.3 | 2 | |||
| Dinoflagellates | ||||||||
| Symbiodinium microadriaticum | 745,992,902 | GCA_001939145 | 1 | 0 | 2 | 1 | 5 | |
| Symbiodinium sp. clade A Y106 | 756,831,958 | GCA_003297005 | 2 | 0 | 0 | 0 | 1 | |
| Symbiodinium sp. clade C Y103 | 674,313,450 | CA_003297045 | 1 | 0 | 0 | 0 | 3 | |
| Breviolum minutum | 603,733,232 | GCA_000507305 | 1 | 0 | 1 | 2 | 5 | |
| Prorocentrum minimum | 29,349,011 | GCA_001652855 | 2 | 0 | 0 | 1 | 1 | |
| Average | 1.4 | 0 | 0.6 | 0.8 | 3 | |||
| Cryptophyte | ||||||||
| Guillardia theta | 83,457,412 | GCA_000315625 | 8 | 0 | 0 | 0 | 3 | |
| Chromerids | ||||||||
| Vitrella brassicaformis | 71,768,979 | GCA_001179505 | 3 | 0 | 18 | 1 | 2 | |
| Chromera velia | 187,454,854 | GCA_000585135 | 5 | 1 | 9 | 1 | 3 | |
| Average | 4 | 0.5 | 13.5 | 1 | 2.5 | |||
| Chlorarachinophytes | ||||||||
| Bigelowiella natans | 91,405,885 | GCA_000320545 | 2 | 0 | 1 | 3 | 0 | |
| Euglenophytes | ||||||||
| Euglena gracilis | 1,435,499,417 | GCA_900893395 | 7 | 1 | 3 | 6 | 7 | |