Table 1.

Output statistics and annotation information of the sequencing reads for each sample.

Sample	Raw Reads	Clean Reads	Raw Bases	Clean Bases	Clean Reads Rate (%)	Clean Q30 Rate (%)	Mapped Reads	Mapping Rate (%)	MultiMap Reads	MultiMap Rate (%)
T1	130,167,700	118,548,640	19,525,155,000	17,782,296,000	91.07	93.46	102,594,735	86.54	1,762,257	1.49
T2	126,086,574	115,719,768	18,912,986,100	17,357,965,200	91.78	93.67	100,909,904	87.20	1,870,468	1.62
T3	129,766,416	118,451,046	19,464,962,400	17,767,656,900	91.28	93.18	100,393,163	84.75	2,107,619	1.78
T4	131,819,754	117,900,806	19,772,963,100	17,685,120,900	89.44	92.68	100,695,085	85.41	1,779,623	1.51
T5	134,001,318	119,376,642	20,100,197,700	17,906,496,300	89.09	93.31	101,578,639	85.09	1,756,397	1.47
C1	123,105,520	109,577,762	18,465,828,000	16,436,664,300	89.01	93.49	95,044,586	86.74	1,440,056	1.31
C2	128,175,504	119,045,316	19,226,325,600	17,856,797,400	92.88	93.80	106,685,232	89.62	1,338,762	1.12
C3	131,962,046	120,026,894	19,794,306,900	18,004,034,100	90.96	93.37	103,784,877	86.47	1,380,399	1.15
C4	125,346,964	111,498,914	18,802,044,600	16,724,837,100	88.95	93.55	95,706,661	85.84	1,420,326	1.27
C5	131,369,282	118,473,848	19,705,392,300	17,771,077,200	90.18	93.45	103,127,477	87.05	1,496,137	1.26