Table 2.
Windows that explained >1% of the additive genetic variance for birth weight in Simmental beef cattle.
| Chr a | Window Region (bp) b | gVar (%) c | topSNP d | Candidate Gene e | Distance |
|---|---|---|---|---|---|
| 10 | 64,843,548–64,888,989 | 7.89 | BovineHD1000018698 | SQOR | 195,750 |
| 18 | 46,973,033–47,054,361 | 6.52 | BovineHD1800013865 | TBCB | 971 |
| 13 | 32,898,989–32,942,587 | 4.51 | BovineHD1300009582 | CACNB2 | 106,042 |
| 17 | 59,422,381–59,533,974 | 4.23 | BovineHD1700016840 | WSB2 | 634 |
| 21 | 54,246,453–54,304,950 | 4.17 | BovineHD2100015513 | DYNLL1 | 49,145 |
| 1 | 86,864,010–87,000,954 | 3.00 | BovineHD0100024730 | CCDC39 | 89,435 |
| 18 | 43,486,335–43,539,576 | 2.83 | BovineHD1800012856 | CEP89 | within |
| 7 | 25,274,362–25,344,621 | 2.51 | BovineHD0700006961 | CHSY3 | within |
| 10 | 22,200,536–22,227,480 | 2.20 | BovineHD4100007964 | TRDC | within |
| 21 | 18,442,926–18,507,549 | 2.06 | BovineHD4100015053 | / | / |
| 18 | 9,390,632–9,440,030 | 1.78 | BovineHD4100013431 | CDH13 | 122,107 |
| 16 | 55,454,686–55,576,782 | 1.57 | BovineHD1600015438 | BOVAGGRUS | 12,062 |
| 2 | 84,272,058–84,486,086 | 1.35 | BovineHD0200024049 | SLC39A10 | 461,944 |
| 27 | 17,515,069–17,628,482 | 1.35 | BovineHD2700005087 | / | / |
| 1 | 93,966,859–94,071,139 | 1.24 | BovineHD0100026650 | NLGN1 | 334,630 |
| 20 | 58,103,188–58,151,048 | 1.14 | BovineHD2000016087 | ANKH | 274,075 |
| 22 | 21,743,429–21,782,083 | 1.14 | BovineHD2200006300 | ITPR1 | within |
| 3 | 83,073,814–83,124,751 | 1.07 | BovineHD0300023782 | ATG4C | 225,105 |
a Chromosomes; b Window position in Ensembl; c The proportion of the genetic variance explained by 20 adjacent SNP window; d The SNP that explained the largest proportion of genetic variance within each window (equal to the value of the 20 adjacent SNP window explained); e Candidate genes near the top SNPs.