Table 3.
The common SVs in both BY4742 and SY14.
| Chrom | Start | End | Type | Gene name |
|---|---|---|---|---|
| chr3 | 12542 | 200120 | DUP | HMLALPHA2, HMLALPHA1, VAC17, MRC1, KRR1, FYV5, ADF1, MIC10, PRD1, PEX34, KAR4, RDT1, PBN1, LRE1, APA1, YCL049C, YCL048W-A, SPS22, POF1, EMC1, MGR1, YCL042W, GLK1, GID7, ATG22, SRO9, GFD2, GRX1, LSB5, MXR2, STE50, HIS4, BIK1, RNQ1, FUS1, HBN1, FRM2, AGP1, tE(UUC)C, YCL021W-A, YCL019W, YCL020W, SUP53, LEU2, NFS1, DCC1, YCL012C, GBP2, SGF29, ILV6, STP22, VMA9, snR43, LDB16, PGS1, YCL002C, RER1, YCL001W-A, YCL001W-B, YCR001W, CDC10, MRPL32, YCP4, CIT2, YCR006C, SUF2, YCR007C, tN(GUU)C, SAT4, ADY2, ADP1, PGK1, POL4, CTO1, snR33, SUF16, YCR016W, SRD1, tM(CAU)C, tK(CUU)C, MAK32, PET18, MAK31, HTL1, HSP30, YCR022C, YCR023C, SLM5, YCR024C-B, PMP1, NPP1, RHB1, tQ(UUG)C, FEN2, RIM1, SYP1, snR65, RPS14A, snR189, SNT1, ELO2, RRP43, RBK1, BUD5, MATALPHA2, CHA1, SPB1, PDI1, RRP7, KCC4, BUD3, CWH43, YCR025C, BPH1, PHO87, RVS161 |
| chr3 | 12717 | 200620 | DEL | HMLALPHA2, HMLALPHA1, VAC17, MRC1, KRR1, FYV5, ADF1, MIC10, PRD1, PEX34, KAR4, RDT1, PBN1, LRE1, APA1, YCL049C, YCL048W-A, SPS22, POF1, EMC1, MGR1, YCL042W, GLK1, GID7, ATG22, SRO9, GFD2, GRX1, LSB5, MXR2, STE50, HIS4, BIK1, RNQ1, FUS1, HBN1, FRM2, AGP1, tE(UUC)C, YCL021W-A, YCL019W, YCL020W, SUP53, LEU2, NFS1, DCC1, YCL012C, GBP2, SGF29, ILV6, STP22, VMA9, snR43, LDB16, PGS1, YCL002C, RER1, YCL001W-A, YCL001W-B, YCR001W, CDC10, MRPL32, YCP4, CIT2, YCR006C, SUF2, YCR007C, tN(GUU)C, SAT4, ADY2, ADP1, PGK1, POL4, CTO1, snR33, SUF16, YCR016W, SRD1, tM(CAU)C, tK(CUU)C, MAK32, PET18, MAK31, HTL1, HSP30, YCR022C, YCR023C, SLM5, YCR024C-B, PMP1, NPP1, RHB1, tQ(UUG)C, FEN2, RIM1, SYP1, snR65, RPS14A, snR189, SNT1, ELO2, RRP43, RBK1, BUD5, MATALPHA2, MATALPHA1, CHA1, SPB1, PDI1, RRP7, KCC4, BUD3, CWH43, YCR025C, BPH1, PHO87, RVS161 |
| chr4 | 1335446 | 1335495 | INS | PPZ2 |
| chr4 | 528917 | 537428 | DEL | ENA5, ENA2, ENA1 |
| chr7 | 530002 | 530092 | INS | MTL1 |
| chr8 | 212266 | 216250 | DUP | CUP1-1, YHR054C, RUF5-2, CUP1-2, RSC30, RUF5-1 |
| chr9 | 25585 | 25655 | INS | CSS1 |
| chr11 | 64188 | 64283 | INS | MNN4 |
| chr12 | 451417 | 467360 | DUP | RDN37-1, ETS2-1, RDN25-1, TAR1, ITS2-1, RDN58-1, ITS1-1, RDN18-1, ETS1-1, RDN5-1, RDN37-2, ETS2-2, RDN25-2, YLR154C-G, ITS2-2, RDN58-2, ITS1-2, RDN18-2, ETS1-2 |
| chr13 | 908134 | 908705 | DUP | YMR317W |
| chr14 | 415052 | 415283 | INS | DBP2 |
| chr16 | 528208 | 528340 | INS | CIP1 |
| MT | 1 | 85779 | DUP | tP(UGG)Q, 15S_RRNA, tW(UCA)Q, AI1, AI5_BETA, ATP8, ATP6, tE(UUC)Q, COB, BI4, BI3, BI2, OLI1, tS(UGA)Q2, 21S_RRNA, SCEI, tT(UGU)Q1, tC(GCA)Q, tH(GUG)Q, tL(UAA)Q, tQ(UUG)Q, tK(UUU)Q, tR(UCU)Q1, tG(UCC)Q, tD(GUC)Q, tS(GCU)Q1, tR(ACG)Q2, tA(UGC)Q, tI(GAU)Q, tY(GUA)Q, tN(GUU)Q, tM(CAU)Q1, COX2, Q0255, tF(GAA)Q, tT(UAG)Q2, tV(UAC)Q, COX3, tM(CAU)Q2, RPM1, COX1, AI5_ALPHA, AI4, AI3, AI2, VAR1 |
| MT | 41768 | 42012 | INS | COB, BI4 |