Table 3. Prediction of HLA-A24, HLA-A2 and HLA-DR1 epitopes of Kmp-11-Gp63.
| MHC supertypes | SYFPEITHI | Rankpep | NetCTL 1.2 server | NetMHC 4.0 server | ||||
|---|---|---|---|---|---|---|---|---|
| HLA-A24 | 4 | TYEEFSAKL | 4 | TYEEFSAKL | 4 | TYEEFSAKL | ||
| 52 | RMIKHTEKF | 47 | HYEKFERMI | 52 | RMIKHTEKF | |||
| 114 | KYLIPQALQ | 182 | AWATTCQVF | 182 | AWATTCQVF | |||
| 72 | HFKQKFAEL | 210 | RYDQLVTRV | 210 | RYDQLVTRV | |||
| 310 | YYSALTMAI | 310 | YYSALTMAI | 310 | YYSALTMAI | |||
| 268 | QYGCGTLEY | 311 | YSALTMAIF | 268 | QYGCGTLEY | |||
| 324 | FYQADFSKL | 324 | FYQADFSKL | 324 | FYQADFSKL | |||
| 114 | KYLIPQALQ | |||||||
| 221 | THEMAHALG | |||||||
| HLA-A2 | 116 | YLIPQALQL | 116 | YLIPQALQL | 116 | YLIPQALQL | ||
| 238 | RILESISNV | 238 | RILESISNV | 238 | RILESISNV | |||
| 181 | LAWATTCQV | 181 | LAWATTCQV | 300 | FQDLGFYQA | |||
| 223 | MAHALGFSV | 223 | MAHALGFSV | 297 | AQDELMAPA | |||
| 121 | ALQLHTERL | 121 | ALQLHTERL | |||||
| 314 | LTMAIFQDL | 314 | LTMAIFQDL | |||||
| 293 | KMRNAQDEL | |||||||
| 206 | NIASRYDQL | |||||||
| 219 | VTHEMAHAL | |||||||
| 157 | HITDGLSNT | |||||||
| 166 | DFVMYVASV | |||||||
| 213 | QLVTRVVTH | |||||||
| 255 | VINSSTAVA | |||||||
| HLA-DR1 | 22 | KMQEQNAKF | ||||||
| 53 | RMIKEHTEK | |||||||
| 309 | GYYSALTMA | |||||||
| 210 | RYDQLVTRV | |||||||
| 220 | THEMAHALG | |||||||
| 149 | GHFKVPPAH | |||||||
| 73 | FKQKFAELL | |||||||
| 310 | YYSALTMAI | |||||||
| 84 | QKAAQYPSK | |||||||
| 61 | KFNKKMHEH | |||||||
| 179 | DVLAWATTC | |||||||
| 324 | FYQADFSKL | |||||||
| 127 | ERLKVRQVQ | |||||||
| 115 | KYLIPQALQ | |||||||
| 290 | SHIKMRNAQ | |||||||
| 130 | KVRQVQDKW | |||||||
| 160 | DFVMYVASV | |||||||
The results contain residues numbers and peptide sequence, which have been analyzed online by using four different HLA epitopes prediction systems. The results that are simultaneously predicted by three systems are marked with underline.