Table 1.
Differentially edited sites identified by RNA-seq in the mef37-1, pgn and otp90 mutants compared to edit extent at these sites in dyw2 mutant.
| Mutant | Position 1 | Site Name 2 | WT 3 | Mutant 4 | ΔEE 5 | Padj. 6 | dyw2 7 | ΔEE dyw2 8 | Padj. dyw2 9 |
|---|---|---|---|---|---|---|---|---|---|
| mef37-1 | M17869 | ccmB_566 | 90.5% | 6.6% | −93% | 0.000 | 13% | −86% | 0.000 |
| M17884 | ccmB_551 | 96.4% | 1.4% | −99% | 0.000 | 4% | −96% | 0.000 | |
| M23217 | rps3_1470 | 72.4% | 0.0% | −100% | 0.000 | 1% | −99% | 0.000 | |
| M49473 | atp6_71 | 0.6% | 0.0% | −100% | 0.002 | ND | ND | ND | |
| M189896 | ccmFc_414 | 3.5% | 0.0% | −100% | 0.002 | 0% | −98% | 0.000 | |
| M215126 | nad4_437 | 98.1% | 48.5% | −51% | 0.000 | 71% | −28% | 0.000 | |
| M219378 | mttb_387 | 42.8% | 5.7% | −87% | 0.000 | 1% | −96% | 0.000 | |
| M308476 | ccmC_179 | 95.7% | 0.9% | −99% | 0.000 | 2% | −97% | 0.000 | |
| M362007 | nad4L_trailer_72 | 90.2% | 1.8% | −98% | 0.000 | 2% | −97% | 0.000 | |
| M362343 | atp4_138 | 92.1% | 1.3% | −99% | 0.000 | 5% | −95% | 0.000 | |
| M362349 | atp4_144 | 7.7% | 27.3% | 253% | 0.000 | 46% | 331% | 0.000 | |
| pgn | M8348 | cox2_742 | 99.6% | 0.0% | −100% | 0.000 | 11% | −89% | 0.000 |
| M165765 | nad6_leader_-73 | 84.4% | 0.2% | −100% | 0.000 | 3% | −97% | 0.000 | |
| otp90 | M17839 | ccmB_596 | 81.8% | 23.0% | −72% | 0.000 | 93% | 11% | 0.000 |
| M18355 | ccmB_80 | 83.9% | 5.9% | −93% | 0.000 | 89% | 12% | 0.000 | |
| M59321 | nad1_500 | 73.9% | 0.0% | −100% | 0.000 | 87% | −3% | 1.000 | |
| M191687 | ccmFc_1246 | 67.6% | 12.7% | −81% | 0,000 | 77% | 26% | 0.000 | |
| M209816 | nad4_194 | 9.6% | 14.7% | 54% | 0.027 | 2% | −72% | 0.000 | |
| M209909 | nad4_111 | 68.9% | 84.6% | 23% | 0.000 | 92% | 5% | 0.000 | |
| M219657 | mttb_108 | 4.8% | 0.2% | −95% | 0.006 | 0% | −97% | 0.000 | |
| M219668 | mttb_97 | 81.6% | 1.9% | −98% | 0.000 | 77% | −4% | 1.000 | |
| M233590 | matR_1950 | 3.1% | 7.8% | 149% | 0.049 | 0% | −94% | 0.000 | |
| M308481 | ccmC_184 | 83.3% | 5.6% | −93% | 0.000 | 87% | 4% | 1.000 | |
| M329728 | cox3_trailer_248 | 0.6% | 0.0% | −92% | 0.000 | 2% | 257% | 0.000 | |
| M362007 | nad4L_trailer_72 | 86.9% | 92.6% | 7% | 0.000 | 2% | −97% | 0.000 |
1 M stands for “mitochondrion” followed by the position of the site in the mitochondrial genome of Col-0. 2 the name of the transcript followed by the position of the site after the start codon except when “trailer” or “leader” is mentioned in which case it is the position after the stop codon or before the start codon respectively. 3 editing extent in Col-0. 4 editing extent in the mutant. 5 variation of editing extent between the mutant and Col-0. 6 Pvalue adjusted with the Bonferroni correction for the mutant/Col-0 comparison. Values below 0.05 are considered significant. 7 editing extent in dyw2. 8 variation of editing extent between dyw2 and Col-0. 9 Adjusted Pvalue for the dyw2/Col-0 comparison. ND: not detected. The values for the detected editing sites are given in Data S1.