Table 3.
Prediction of binding on their associated editing sites for the 18 characterized E+ PPR proteins using the system published in [17].
| PPR | Position 1 | Site Name 2 | Rank 3 | Rank DYW2 4 |
|---|---|---|---|---|
| AEF1 | M26928 | nad5_1580 | 1 | 1 |
| AEF1 | P12707 | atpF_92 | 18 | 6 |
| AHG11 | M215187 | na d4_376 | 1 | 1 |
| CLB19 | P69942 | clpP_559 | 2 | 2 |
| CLB19 | P78691 | rpoA_200 | 5 | 5 |
| COD1 | M6961 | cox2_698 | 6 | 2 |
| COD1 | M6516 | cox2_253 | 8 | 4 |
| COD1 | M209881 | nad4_1129 | 34 | 14 |
| CRR21 | P116785 | ndhD_383 | 1 | 1 |
| CWM1 | M235780 | nad5_598 | 2 | 1 |
| CWM1 | M18007 | ccmB_428 | 4 | 2 |
| CWM1 | M308760 | ccmC_463 | 12 | 6 |
| GRS1 | M165940 | nad6_103 | 1 | 1 |
| GRS1 | M361691 | nad4L_55 | 2 | 2 |
| GRS1 | M160356 | rps4_377 | 33 | 14 |
| GRS1 | M83057 | nad1_265 | 109 | 41 |
| MEF12 | M235556 | nad5_374 | 1 | 1 |
| MEF13 | M189532 | ccmFc_50 | 1 | 1 |
| MEF13 | M189897 | ccmFc_415 | 2 | 2 |
| MEF13 | M161857 | nad2_59 | 3 | 3 |
| MEF13 | M215405 | nad4_158 | 4 | 4 |
| MEF13 | M28242 | nad5_1916 | 5 | 5 |
| MEF13 | M330460 | cox3_314 | 6 | 6 |
| MEF13 | M27013 | nad5_1665 | 47 | 21 |
| MEF21 | M330517 | cox3_257 | 1 | 1 |
| MEF25 | M83014 | nad1_308 | 12 | 7 |
| MEF37 | M215126 | nad4_437 | 1 | 1 |
| MEF37 | M17884 | ccmB_551 | 3 | 2 |
| MEF37 | M17869 | ccmB_566 | 12 | 5 |
| MEF37 | M23217 | rps3_1470 | 17 | 8 |
| MEF37 | M308476 | ccmC_179 | 46 | 22 |
| MEF37 | M362343 | atp4_138 | 57 | 24 |
| MEF37 | M219378 | mttB_387 | 70 | 31 |
| OTP72 | M23724 | rpl16_440 | 1 | 1 |
| OTP80 | P86055 | rpl23_89 | 1 | 1 |
| PGN | M8348 | cox2_742 | 1 | 1 |
| PGN | M165765 | nad6_leader_-73 | 2 | 2 |
| SLG1 | M288290 | nad3_250 | 1 | 1 |
| SLO1 | M215114 | nad4_449 | 1 | 1 |
| SLO1 | M24992 | nad9_328 | 2 | 2 |
| SLO2 | M241512 | nad7_739 | 2 | 1 |
| SLO2 | M219621 | mttB_144 | 4 | 2 |
| SLO2 | M361746 | nad4L_110 | 76 | 23 |
| SLO2 | M219099 | mttB_666 | 139 | 47 |
| SLO2 | M219620 | mttB_145 | 177 | 65 |
1 M stands for “mitochondrion” followed by the position of the site in the mitochondrial genome of Col-0. P stands for “plastid”. 2 the name of the transcript followed by the position of the site after the start codon except when “leader” is mentioned in which case it is the position before the start codon. 3 rank of the corresponding editing site using the full list of potential binding sites. 4 rank using only the DYW2-dependent sites.