Table 1.
Heteroplasmic mitochondrial single nucleotide polymorphisms (SNPs) in Col-0 wild-type, generation 10 uracil DNA glycosylase (UNG) mutant lines, Col-0 MTP-A3G, and UNG MTP-A3G: SNPs were called using VarDict as described in the Methods section. SNP counts are shown for the entire mitochondrial genome. For the full spectrum of SNP types, including allele frequencies, see Supplementary File 2.
| Sample | A-C | A-G | A-T | C-A | C-G | C-T | G-A | G-C | G-T | T-A | T-C | T-G | Total | GC-AT/Total Ratio |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Col-0 | 0 | 17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11 | 0 | 29 | 0 |
| UNG10 115 | 0 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 7 | 0 | 15 | 0 |
| UNG10 159 | 0 | 15 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 21 | 0 | 36 | 0 |
| UNG10 163 | 1 | 305 | 10 | 3 | 1 | 3 | 7 | 0 | 1 | 21 | 281 | 0 | 633 | 0.016 |
| UNG10 176 | 0 | 97 | 3 | 0 | 0 | 0 | 1 | 0 | 2 | 4 | 76 | 0 | 183 | 0.0055 |
| UNG10 198 | 0 | 9 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 6 | 0 | 17 | 0.059 |
| UNG10 201 | 0 | 12 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 15 | 0 | 30 | 0.033 |
| UNG10 203 | 0 | 9 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 5 | 0 | 16 | 0 |
| Col-0 MTP A3G | 0 | 6 | 0 | 0 | 0 | 3 | 4 | 0 | 0 | 0 | 2 | 0 | 15 | 0.47 |
| UNG MTP A3G | 0 | 0 | 0 | 0 | 0 | 5 | 7 | 0 | 0 | 0 | 1 | 0 | 13 | 0.92 |