Table 2.
Genome characterization of APRV 15AC18 strain and comparison with other dinovernaviruses.
| APRV 15AC18 | Amino Acid Sequence Identities and Similarity | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Terminal Sequences (5’-3’) | APRV | FAKV CSW77 | ||||||||
| Segment (Accession No.) | Segment Length (bp) | ORF Length (aa) | Protein | Encoded Gene | 5’ Terminus | 3’ Terminus | Identity (%) | Similarity (%) | Identity (%) | Similarity (%) |
| 1 (LC496848) | 3820 | 1189 | VP1 | nonstructural protein | AGUUUAAUUCCC | UUGAUCCUAAGU | 86.8 | 98.6 | 81.7 | 97.6 |
| 2 (LC496849) | 3752 | 1233 | VP2 | RNA-dependent RNA polymerase | AGUUAAACCGCC | UUGUUUUUAAGU | 96.4 | 99.5 | 89.5 | 98.5 |
| 3 (LC496850) | 3732 | 1202 | VP3 | major capsid protein | AGUUUAAAACCC | UUUGAUACUAGU | 95.8 | 99.4 | 90.0 | 99.0 |
| 4 (LC496851) | 3375 | 1003 | VP4 | nonstructural protein | AGUUUAAAAACC | UUAAUCCUAAGU | 87.4 | 97.8 | 72.8 | 93.3 |
| 5 (LC496852) | 3227 | 1056 | VP5 | turret protein | AGUUAAAACCAC | UUUAGUAAUAGU | 95.5 | 99.7 | 87.8 | 98.4 |
| 6 (LC496853) | 1775 | 540 | VP6 | structural protein | AGUUUAAACCCA | UUUGAUAAUAGU | 94.4 | 99.6 | 90.4 | 98.9 |
| 7 (LC496854) | 1171 | 348 | VP7 | clamp protein | AGUUAAAAACCA | UUUAGUAAUAGU | 95.7 | 100.0 | 87.9 | 99.1 |
| 8 (LC496855) | 1151 | 345 | VP8 | nonstructural protein | AGUUUAAAUCCU | UUUGAUAAUAGU | 77.7 | 96.2 | 64.6 | 93.3 |
| 9 (LC496856) | 1151 | 278 | VP9 | nonstructural protein | AGUUAAAACCCA | UUUAGUAAUAGU | 95.7 | 99.6 | 80.2 | 96.8 |
Underlined sequences are points of nucleotide substitution.