Table 1.
CHR | Gene | Multi-SNP-based SMR | iRIGS | MAGMA | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Name | Start | End | Type | BrainSeq | CommonMind | PsychENCODE | Index SNP | CHR | Position | Pdepression | Post_Prob | European | Chinese | |
2 | AC068057.2 | 105363096 | 105374177 | lincRNA | 1.87E–05 | 3.27E–05 | 2.13E–05 | NA | NA | NA | NA | NA | 6.33E–06 | 0.364 |
3 | ZKSCAN7 | 44596685 | 44624975 | protein_coding | 2.45E–04 | 8.02E–05 | 1.59E–05 | rs4346585 | 3 | 44736493 | 7.13E–10 | 0.061 | 6.80E–08 | 0.484 |
3 | ZNF502 | 44754135 | 44765323 | protein_coding | 7.02E–05 | 5.29E–06 | 3.85E–06 | rs4346585 | 3 | 44736493 | 7.13E–10 | 0.031 | 4.38E–05 | 0.394 |
3 | ZNF501 | 44771088 | 44778575 | protein_coding | 3.29E–04 | 2.14E–05 | 6.84E–06 | rs4346585 | 3 | 44736493 | 7.13E–10 | 0.024 | 1.78E–04 | 0.320 |
3 | NEK4 | 52744800 | 52804965 | protein_coding | 3.45E–04 | 3.91E–04 | 1.17E–05 | rs7624336 | 3 | 53244151 | 3.96E–08 | 0.005 | 3.44E–05 | 0.436 |
13 | B3GALTL | 31774073 | 31906413 | protein_coding | 4.68E–05 | 1.01E–06 | 1.11E–09 | rs1409379 | 13 | 31907741 | 1.67E–09 | 0.026 | 7.21E–13 | 0.777 |
14 | LRFN5 | 42076773 | 42373752 | protein_coding | 4.05E–06 | 1.96E–04 | 4.11E–04 | rs61990288 | 14 | 42074726 | 1.68E–13 | 1.000 | 1.01E–11 | 0.406 |
14 | AREL1 | 75120140 | 75179818 | protein_coding | 1.10E–05 | 6.47E–05 | 2.18E–06 | rs1045430 | 14 | 75130235 | 7.31E–13 | 0.019 | 1.32E–07 | 0.572 |
14 | TRMT61A | 103995521 | 104003410 | protein_coding | 3.80E–05 | 2.42E–05 | 4.47E–08 | rs10149470 | 14 | 104017953 | 3.72E–14 | 0.002 | 6.41E–10 | 0.624 |
18 | DCC | 49866542 | 51057784 | protein_coding | 6.58E–05 | 1.27E–04 | 2.78E–05 | rs7227069 | 18 | 50731802 | 1.50E–11 | 0.828 | 2.85E–12 | 3.21E–04 |
Post_Prob posterior probability.