Table 1.
Calculated and experimental data of FK228 binding to HDAC1 and HDAC6 (ΔG is in kcal/mol and IC50 value is in nM).
| Systems | ΔEele | ΔEvdW | ΔGpol | ΔGnon-pol | Δ | |
|---|---|---|---|---|---|---|
| HDAC1–FK228 | −12.47 | −40.38 | 21.21 | −5.37 | −37.01 | 3.97 |
| HDAC6–FK228 | −8.18 | −24.68 | 11.53 | −4.51 | −25.84 | 787 |
aCalculated MM/GBSA binding free energies in this study.
bIC50 values obtained from previous study (Yurek-George et al., 2007).