Table 3.
Expression analysis of 12 candidate reference genes by BestKeeper under abiotic stress condition in Agave sisalana
| Rank | Drought | Rehydration | Temperature (± 60 °C) | Cold (± 4 °C) | NaCl (100, 200, 300, 400) mM | Total | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GENE | Std. | CV | GENE | Std. | CV | GENE | Std. | CV | GENE | Std. | CV | GENE | Std. | CV | GENE | Std. | CV | |
| 1 | β-Tub 4 | ± 0.25 | 1.15 | GAPDH | ± 0.12 | 0.87 | CYC-A | ± 0.12 | 0.49 | CUL-1 | 0.06 | 0.23 | RP II | 0.12 | 0.49 | WIN-1 | 0.79 | 3.02 |
| 2 | EEF1α | ± 0.32 | 1.12 | PP2A-1 | ± 0.36 | 1.47 |
eIF-4A GAPDH β-Tub 4 |
± 0.30 | 1.18 |
ACT11 WIN-1 |
0.23 | 0.84 |
β-Tub 4 CYC-A |
0.19 | 0.78 | ACT11 | 0.89 | 3.31 |
| 3 | ACT11 | 1.10 |
RP II ARF2 |
± 0.42 | 1.98 | 1.84 | 1.19 | 0.73 | CUL-1 | 0.95 | 3.45 | |||||||
| 4 | ARF2 | ± 0.36 | 1.51 | 2.28 | 1.56 | CYC-A | 0.46 | 1.73 | ARF2 | 0.22 | 1.02 | PP2A-1 | 1.13 | 4.32 | ||||
| 5 | GAPDH | ± 0.37 | 1.67 | β-Tub 4 | ± 0.54 | 2.68 | CUL-1 | ± 0.34 | 1.24 | β-Tub 4 | 0.58 | 2.30 | CUL-1 | 0.26 | 0.96 | CYC-A | 1.54 | 6.40 |
| 6 | PP2A-1 | ± 0.42 | 2.53 | CUL-1 | ± 0.61 | 2.39 | ACT11 | ± 0.40 | 1.57 | RP II | 0.73 | 2.71 | GAPDH | 0.33 | 1.82 |
RP II ARF2 |
1.70 | 7.09 |
| 7 | CYC-A | ± 0.58 | 2.17 | eIF-4A | ± 0.73 | 3.29 | WIN-1 | ± 0.46 | 1.72 |
PP2A-1 UBE2 |
0.82 0.84 |
3.0 | UBE2 | 0.39 | 1.71 | |||
| 8 | CUL-1 | ± 0.72 | 3.01 | ACT11 | ± 0.78 | 2.96 |
EEF1α ARF2 |
± 0.60 | 2.51 | WIN-1 | 0.39 | 1.46 | β-Tub 4 | 1.76 | 7.76 | |||
| 9 | WIN-1 | ± 0.72 | 2.51 | EEF1α | ± 0.95 | 4.26 | 3.01 | eIF-4A | 0.93 | 3.22 | eIF-4A | 0.44 | 1.61 | UBE2 | 1.82 | 8.03 | ||
| 10 | eIF-4A | ± 0.72 | 2.81 | CYC-A | ± 1.11 | 5.21 | PP2A-1 | ± 1.16 | 4.61 | ARF2 | 1.07 | 4.21 | ACT11 | 0.53 | 1.98 | eIF-4A | 2.10 | 7.96 |
| 11 | RP II | ± 0.79 | 2.83 | WIN-1 | ± 1.51 | 6.05 | RP II | ± 1.55 | 6.17 | GAPDH | 1.99 | 8.25 | EEF1α | 0.60 | 1.99 | GAPDH | 2.38 | 13.3 |
| 12 | UBE2 | ± 1.18 | 5.08 | UBE2 | ± 2.85 | 13.8 | UBE2 | ± 1.88 | 8.11 | EEF1α | 3.06 | 9.27 | PP2A-1 | 0.71 | 2.65 | EEF1α | 3.45 | 12.5 |