KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rb anti Histone H3 (acetyl K27) | Abcam | RRID:AB_2118291 |
Ms anti Human/Mouse UCP1 | R&D | RRID: AB_10572490 |
Ms anti Alpha tubulin | Sigma | RRID:AB_477583 |
Ms anti Total Oxphos Rodent Antibody Cocktail | Abcam | RRID:AB_2629281 |
Anti-rabbit IgG IRDye 800CW | Li-Cor | RRID:AB_621848 |
Anti-mouse IgG IRDye 800CW | Li-Cor | RRID:AB_621847 |
Chemicals, Peptides, and Recombinant Proteins | ||
BCS | ATCC | Cat#30–2030 |
HEPES 1M | Thermo Fisher | Cat#15630080 |
16% Paraformaldehyde | EMS | Cat#15710 |
Protein-A Sepharose CL-4B Beads | GE Healthcare | Cat#17–0780-01 |
PCR Master Mix, Power SYBR Green | Applied Biosystems | Cat#4367659 |
Lipofectamine 2000 | Invitrogen | Cat#11668027 |
NEBNext Ultra II DNA Library Prep with Sample Purification Beads | NEB | Cat#E7103 |
NEB Next Ultra RNA Library Prep Kit | NEB | Cat#E7530 |
DMEM | MediaTech | Cat#MT10–017-CV |
Dispase II | Roche | Cat#4942078001 |
Collagenase D | Roche | Cat# 11088882001 |
TRIzol | Invitrogen | Cat#15596018 |
Purelink RNA Mini columns | Invitrogen | Cat#LT-12183018 |
ABI High-Capacity cDNA Synthesis kit | Applied Biosystems | Cat#4368813 |
FluoroBrite DMEM | Thermo Fisher | Cat# A1896701 |
CL-316,243 | Sigma Aldrich | Cat#C5976 |
Free Glycerol Reagent | Sigma Aldrich | Cat#F6428 |
Bovine Serum Albumin, Fraction V, Fatty Acid Free | Roche | Cat#03117057001 |
Pierce BCA Protein Assay | Thermo Fischer | Cat#23225 |
Deposited Data | ||
RNA sequencing data | GEO repository | GSE144188 |
H3K27Ac ChIP Sequencing data | GEO repository | GSE144188 |
Experimental Models: Organisms/Strains | ||
Adipoq-Cre | The Jackson Laboratory | RRID:IMSR_JAX:010803 |
Ebf2 fl/fl | Dr. Patrick Seale | N/A |
Ebf1 fl/fl | Dr. Rudolph Grosschedl | N/A |
Recombinant DNA | ||
pcDNA-PGC1 α, and pcDNA-ERRa | Dr. Mitchell Lazar | N/A |
pcDNA-EBF2, pcDNA-EBF1, pcDNA-EBF2, pcDNA-EBF3, pcDNA-PPARγ, pGL4-Ucp1 −6, and pcDNA-RXRα | Dr. Patrick Seale | N/A |
lentiCRISPR v2 | Addgene (F. Zhang) | RRID:Addgene_52961 |
pMD2.G | Addgene (D. Trono) | RRID:Addgene_12259 |
psPAX2 | Addgene (D. Trono) | RRID:Addgene_12260 |
Software and Algorithms | ||
GraphPad Prism 7 | Graphpad (www.graphpad.com/scientific-software/prism/ | RRID:SCR_002798 |
UCSC Genome Browser | UCSC (http://genome.ucsc.edu/) | RRID:SCR_005780 |
Morpheus (Heatmaps) by the Broad Institute | https://software.broadinstitute.org/morpheus/ | RRID:SCR_017386 |
Homer | http://homer.ucsd.edu/ | RRID:SCR_010881 |
Star Aligner | https://github.com/alexdobin/STAR | RRID:SCR_015899 |
ToppGene | https://toppgene.cchmc.org/ | RRID:SCR_005726 |